Analysis of interatomic Contacts of Structural Units in PDB entry:
3EB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EB0 entry

There are 4 chains in PDB entry 3EB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ALA 200
A
 ILE 202LYS 375
C
 LYS 7ALA 200
C
 ILE 202LYS 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3EB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 55Right-handed alpha
Helix 2
2
A
124 134Right-handed alpha
Helix 3
3
A
139 159Right-handed alpha
Helix 4
4
A
168 170Right-handed 310
Helix 5
5
A
209 214Right-handed alpha
Helix 6
6
A
221 238Right-handed alpha
Helix 7
7
A
246 259Right-handed alpha
Helix 8
8
A
262 270Right-handed alpha
Helix 9
9
A
285 290Right-handed alpha
Helix 10
10
A
295 306Right-handed alpha
Helix 11
11
A
309 313Right-handed 310
Helix 12
12
A
315 321Right-handed alpha
Helix 13
13
A
322 324Right-handed 310
Helix 14
14
A
325 331Right-handed alpha
Helix 15
15
A
357 364Right-handed alpha
Helix 16
16
A
365 373Right-handed alpha
Helix 17
17
C
48 55Right-handed alpha
Helix 18
18
C
124 135Right-handed alpha
Helix 19
19
C
139 159Right-handed alpha
Helix 20
20
C
168 170Right-handed 310
Helix 21
21
C
209 214Right-handed alpha
Helix 22
22
C
221 238Right-handed alpha
Helix 23
23
C
246 259Right-handed alpha
Helix 24
24
C
262 270Right-handed alpha
Helix 25
25
C
285 290Right-handed alpha
Helix 26
26
C
295 306Right-handed alpha
Helix 27
27
C
309 313Right-handed 310
Helix 28
28
C
315 321Right-handed alpha
Helix 29
29
C
322 324Right-handed 310
Helix 30
30
C
325 330Right-handed alpha
Helix 31
31
C
357 364Right-handed alpha
Helix 32
32
C
365 373Right-handed alpha
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There are 6 sheets in PDB entry 3EB0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
34 41anti-parallel
Strand 4
A
112 117anti-parallel
Strand 5
A
65 71anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
172 174anti-parallel
Strand 3
A
181 183anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
190 191anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 16first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
34 41anti-parallel
Strand 4
C
112 117anti-parallel
Strand 5
C
65 71anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
C
172 174anti-parallel
Strand 3
C
181 183anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
190 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il