Analysis of interatomic Contacts of Structural Units in PDB entry:
3EB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3EB7 entry

There are 3 chains in PDB entry 3EB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 64	ASN 652
B	ILE 64	ASN 652
C	ILE 64	ASN 652

There are 57 helices in PDB entry 3EB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	64	84	Right-handed alpha
Helix 2	2	A	88	104	Right-handed alpha
Helix 3	3	A	109	123	Right-handed alpha
Helix 4	4	A	127	157	Right-handed alpha
Helix 5	5	A	161	183	Right-handed alpha
Helix 6	6	A	184	187	Right-handed 310
Helix 7	7	A	195	217	Right-handed alpha
Helix 8	8	A	223	255	Right-handed alpha
Helix 9	9	A	260	278	Right-handed alpha
Helix 10	10	A	278	284	Right-handed alpha
Helix 11	11	A	285	289	Right-handed 310
Helix 12	12	A	318	322	Right-handed 310
Helix 13	13	A	325	334	Right-handed alpha
Helix 14	14	A	458	462	Right-handed alpha
Helix 15	15	A	470	475	Right-handed alpha
Helix 16	16	A	517	519	Right-handed 310
Helix 17	17	A	529	533	Right-handed 310
Helix 18	18	A	598	602	Right-handed 310
Helix 19	19	A	603	607	Right-handed 310
Helix 20	20	B	64	82	Right-handed alpha
Helix 21	21	B	88	104	Right-handed alpha
Helix 22	22	B	109	123	Right-handed alpha
Helix 23	23	B	127	158	Right-handed alpha
Helix 24	24	B	161	183	Right-handed alpha
Helix 25	25	B	184	187	Right-handed 310
Helix 26	26	B	195	221	Right-handed alpha
Helix 27	27	B	223	255	Right-handed alpha
Helix 28	28	B	260	278	Right-handed alpha
Helix 29	29	B	278	284	Right-handed alpha
Helix 30	30	B	285	289	Right-handed 310
Helix 31	31	B	318	322	Right-handed 310
Helix 32	32	B	325	333	Right-handed alpha
Helix 33	33	B	458	462	Right-handed alpha
Helix 34	34	B	470	475	Right-handed alpha
Helix 35	35	B	517	519	Right-handed 310
Helix 36	36	B	529	533	Right-handed 310
Helix 37	37	B	598	602	Right-handed 310
Helix 38	38	B	603	607	Right-handed 310
Helix 39	39	C	64	82	Right-handed alpha
Helix 40	40	C	88	104	Right-handed alpha
Helix 41	41	C	109	123	Right-handed alpha
Helix 42	42	C	127	159	Right-handed alpha
Helix 43	43	C	161	183	Right-handed alpha
Helix 44	44	C	184	187	Right-handed 310
Helix 45	45	C	195	221	Right-handed alpha
Helix 46	46	C	223	255	Right-handed alpha
Helix 47	47	C	260	278	Right-handed alpha
Helix 48	48	C	278	283	Right-handed alpha
Helix 49	49	C	284	289	Right-handed 310
Helix 50	50	C	318	322	Right-handed 310
Helix 51	51	C	325	334	Right-handed alpha
Helix 52	52	C	458	462	Right-handed alpha
Helix 53	53	C	470	475	Right-handed alpha
Helix 54	54	C	517	519	Right-handed 310
Helix 55	55	C	529	534	Right-handed 310
Helix 56	56	C	598	602	Right-handed 310
Helix 57	57	C	603	607	Right-handed 310

There are 21 sheets in PDB entry 3EB7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	511	515	parallel
Strand 3	A	641	651	anti-parallel
Strand 4	A	539	541	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	511	515	parallel
Strand 3	A	641	651	anti-parallel
Strand 4	A	561	570	anti-parallel
Strand 5	A	608	611	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	490	497	anti-parallel
Strand 3	A	477	485	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	384	first strand
Strand 2	A	359	373	anti-parallel
Strand 3	A	341	355	anti-parallel
Strand 4	A	393	398	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	444	first strand
Strand 2	A	420	432	anti-parallel
Strand 3	A	403	415	anti-parallel
Strand 4	A	452	457	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	550	554	parallel
Strand 3	A	622	630	anti-parallel
Strand 4	A	545	546	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	550	554	parallel
Strand 3	A	622	630	anti-parallel
Strand 4	A	574	580	anti-parallel
Strand 5	A	583	590	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	511	515	parallel
Strand 3	B	641	651	anti-parallel
Strand 4	B	561	570	anti-parallel
Strand 5	B	608	611	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	541	first strand
Strand 2	B	641	651	anti-parallel
Strand 3	B	561	570	anti-parallel
Strand 4	B	616	617	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	490	497	anti-parallel
Strand 3	B	477	485	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	384	first strand
Strand 2	B	359	373	anti-parallel
Strand 3	B	341	355	anti-parallel
Strand 4	B	393	398	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	444	first strand
Strand 2	B	420	433	anti-parallel
Strand 3	B	403	415	anti-parallel
Strand 4	B	452	457	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	550	554	parallel
Strand 3	B	622	630	anti-parallel
Strand 4	B	545	546	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	550	554	parallel
Strand 3	B	622	630	anti-parallel
Strand 4	B	574	580	anti-parallel
Strand 5	B	583	590	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	511	515	parallel
Strand 3	C	641	651	anti-parallel
Strand 4	C	539	541	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	511	515	parallel
Strand 3	C	641	651	anti-parallel
Strand 4	C	561	570	anti-parallel
Strand 5	C	608	611	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	490	497	anti-parallel
Strand 3	C	477	485	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	384	first strand
Strand 2	C	359	373	anti-parallel
Strand 3	C	341	355	anti-parallel
Strand 4	C	393	398	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	444	first strand
Strand 2	C	420	433	anti-parallel
Strand 3	C	403	415	anti-parallel
Strand 4	C	452	457	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	550	554	parallel
Strand 3	C	622	630	anti-parallel
Strand 4	C	545	546	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	550	554	parallel
Strand 3	C	622	630	anti-parallel
Strand 4	C	574	580	anti-parallel
Strand 5	C	583	590	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3EB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
3EB7