Analysis of interatomic Contacts of Structural Units in PDB entry:
3EB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EB8 entry

There are 2 chains in PDB entry 3EB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 53ASP 399
B
 LEU 52ASP 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3EB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 64Right-handed alpha
Helix 2
2
A
113 124Right-handed alpha
Helix 3
3
A
151 161Right-handed alpha
Helix 4
4
A
181 192Right-handed alpha
Helix 5
5
A
193 196Right-handed 310
Helix 6
6
A
208 219Right-handed alpha
Helix 7
7
A
235 247Right-handed alpha
Helix 8
8
A
251 264Right-handed alpha
Helix 9
9
A
267 277Right-handed alpha
Helix 10
10
A
286 308Right-handed alpha
Helix 11
11
A
376 384Right-handed alpha
Helix 12
12
A
385 389Right-handed 310
Helix 13
13
B
56 61Right-handed alpha
Helix 14
14
B
113 124Right-handed alpha
Helix 15
15
B
151 161Right-handed alpha
Helix 16
16
B
181 192Right-handed alpha
Helix 17
17
B
193 196Right-handed 310
Helix 18
18
B
208 219Right-handed alpha
Helix 19
19
B
235 247Right-handed alpha
Helix 20
20
B
251 264Right-handed alpha
Helix 21
21
B
267 277Right-handed alpha
Helix 22
22
B
286 308Right-handed alpha
Helix 23
23
B
376 384Right-handed alpha
Helix 24
24
B
385 389Right-handed 310
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There are 6 sheets in PDB entry 3EB8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
96 103anti-parallel
Strand 5
A
108 111anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
163 165parallel
Strand 3
A
390 399anti-parallel
Strand 4
A
136 142parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
163 165parallel
Strand 3
A
390 399anti-parallel
Strand 4
A
357 369anti-parallel
Strand 5
A
342 354anti-parallel
Strand 6
A
316 325anti-parallel
Strand 7
A
199 202parallel
Strand 8
A
205 206anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
77 83anti-parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
96 103anti-parallel
Strand 5
B
108 111anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
163 165parallel
Strand 3
B
390 399anti-parallel
Strand 4
B
136 142parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
163 165parallel
Strand 3
B
390 399anti-parallel
Strand 4
B
357 369anti-parallel
Strand 5
B
342 354anti-parallel
Strand 6
B
316 325anti-parallel
Strand 7
B
199 202parallel
Strand 8
B
205 206anti-parallel
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