Analysis of interatomic Contacts of Structural Units in PDB entry:
3EBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EBE entry

There are 3 chains in PDB entry 3EBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 235LYS 413
B
 GLN 235GLN 408
C
 PRO 231ALA 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3EBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
252 261Right-handed alpha
Helix 2
2
A
267 269Right-handed 310
Helix 3
3
A
270 277Right-handed alpha
Helix 4
4
A
326 334Right-handed alpha
Helix 5
5
A
365 367Right-handed 310
Helix 6
6
A
403 412Right-handed alpha
Helix 7
7
B
252 261Right-handed alpha
Helix 8
8
B
267 269Right-handed 310
Helix 9
9
B
270 277Right-handed alpha
Helix 10
10
B
326 334Right-handed alpha
Helix 11
11
B
365 367Right-handed 310
Helix 12
12
C
252 261Right-handed alpha
Helix 13
13
C
267 269Right-handed 310
Helix 14
14
C
270 277Right-handed alpha
Helix 15
15
C
326 334Right-handed alpha
Helix 16
16
C
365 367Right-handed 310
Helix 17
17
C
406 418Right-handed alpha
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There are 9 sheets in PDB entry 3EBE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
369 375anti-parallel
Strand 3
A
340 345anti-parallel
Strand 4
A
285 295anti-parallel
Strand 5
A
264 265parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
369 375anti-parallel
Strand 3
A
340 345anti-parallel
Strand 4
A
285 295anti-parallel
Strand 5
A
307 312anti-parallel
Strand 6
A
321 325anti-parallel
Strand 7
A
359 362parallel
Strand 8
A
348 349anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
394 396anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
369 375anti-parallel
Strand 4
B
340 345anti-parallel
Strand 5
B
285 295anti-parallel
Strand 6
B
264 265parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
369 375anti-parallel
Strand 4
B
340 345anti-parallel
Strand 5
B
285 295anti-parallel
Strand 6
B
307 312anti-parallel
Strand 7
B
320 325anti-parallel
Strand 8
B
359 363parallel
Strand 9
B
348 349anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 380first strand
Strand 2
B
394 396anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 247first strand
Strand 2
C
369 375anti-parallel
Strand 3
C
340 345anti-parallel
Strand 4
C
285 295anti-parallel
Strand 5
C
264 265parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 247first strand
Strand 2
C
369 375anti-parallel
Strand 3
C
340 345anti-parallel
Strand 4
C
285 295anti-parallel
Strand 5
C
307 312anti-parallel
Strand 6
C
321 325anti-parallel
Strand 7
C
359 363parallel
Strand 8
C
348 349anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
378 380first strand
Strand 2
C
394 396anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il