Analysis of interatomic Contacts of Structural Units in PDB entry:
3EBL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3EBL entry

There are 6 chains in PDB entry 3EBL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 15	TYR 353
B	THR 14	LEU 352
C	VAL 16	ASN 351
D	VAL 15	TYR 353
E	VAL 16	LEU 352
F	VAL 15	TYR 353

There are 67 helices in PDB entry 3EBL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	35	Right-handed alpha
Helix 2	2	A	42	50	Right-handed alpha
Helix 3	3	A	101	106	Right-handed 310
Helix 4	4	A	131	146	Right-handed alpha
Helix 5	5	A	163	179	Right-handed alpha
Helix 6	6	A	199	214	Right-handed alpha
Helix 7	7	A	234	241	Right-handed alpha
Helix 8	8	A	247	259	Right-handed alpha
Helix 9	9	A	298	312	Right-handed alpha
Helix 10	10	A	327	331	Right-handed 310
Helix 11	11	A	334	353	Right-handed alpha
Helix 12	12	B	17	35	Right-handed alpha
Helix 13	13	B	42	50	Right-handed alpha
Helix 14	14	B	131	146	Right-handed alpha
Helix 15	15	B	163	178	Right-handed alpha
Helix 16	16	B	179	183	Right-handed 310
Helix 17	17	B	198	214	Right-handed alpha
Helix 18	18	B	234	241	Right-handed alpha
Helix 19	19	B	247	259	Right-handed alpha
Helix 20	20	B	298	312	Right-handed alpha
Helix 21	21	B	327	331	Right-handed 310
Helix 22	22	B	334	351	Right-handed alpha
Helix 23	23	C	17	35	Right-handed alpha
Helix 24	24	C	42	50	Right-handed alpha
Helix 25	25	C	131	146	Right-handed alpha
Helix 26	26	C	163	179	Right-handed alpha
Helix 27	27	C	180	183	Right-handed 310
Helix 28	28	C	198	214	Right-handed alpha
Helix 29	29	C	234	241	Right-handed alpha
Helix 30	30	C	247	259	Right-handed alpha
Helix 31	31	C	298	312	Right-handed alpha
Helix 32	32	C	327	331	Right-handed 310
Helix 33	33	C	334	351	Right-handed alpha
Helix 34	34	D	17	35	Right-handed alpha
Helix 35	35	D	42	50	Right-handed alpha
Helix 36	36	D	131	146	Right-handed alpha
Helix 37	37	D	163	179	Right-handed alpha
Helix 38	38	D	180	183	Right-handed 310
Helix 39	39	D	199	214	Right-handed alpha
Helix 40	40	D	234	241	Right-handed alpha
Helix 41	41	D	247	259	Right-handed alpha
Helix 42	42	D	298	312	Right-handed alpha
Helix 43	43	D	327	331	Right-handed 310
Helix 44	44	D	334	352	Right-handed alpha
Helix 45	45	E	17	33	Right-handed alpha
Helix 46	46	E	42	50	Right-handed alpha
Helix 47	47	E	101	106	Right-handed 310
Helix 48	48	E	131	146	Right-handed alpha
Helix 49	49	E	163	178	Right-handed alpha
Helix 50	50	E	179	183	Right-handed 310
Helix 51	51	E	199	214	Right-handed alpha
Helix 52	52	E	234	241	Right-handed alpha
Helix 53	53	E	247	259	Right-handed alpha
Helix 54	54	E	298	312	Right-handed alpha
Helix 55	55	E	327	331	Right-handed 310
Helix 56	56	E	334	351	Right-handed alpha
Helix 57	57	F	17	35	Right-handed alpha
Helix 58	58	F	42	50	Right-handed alpha
Helix 59	59	F	131	146	Right-handed alpha
Helix 60	60	F	163	178	Right-handed alpha
Helix 61	61	F	179	183	Right-handed 310
Helix 62	62	F	198	214	Right-handed alpha
Helix 63	63	F	234	241	Right-handed alpha
Helix 64	64	F	247	259	Right-handed alpha
Helix 65	65	F	298	312	Right-handed alpha
Helix 66	66	F	327	331	Right-handed 310
Helix 67	67	F	334	351	Right-handed alpha

There are 7 sheets in PDB entry 3EBL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	71	first strand
Strand 2	A	76	83	anti-parallel
Strand 3	A	148	152	anti-parallel
Strand 4	A	114	119	parallel
Strand 5	A	189	197	parallel
Strand 6	A	183	184	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	71	first strand
Strand 2	A	76	83	anti-parallel
Strand 3	A	148	152	anti-parallel
Strand 4	A	114	119	parallel
Strand 5	A	189	197	parallel
Strand 6	A	220	224	parallel
Strand 7	A	288	293	parallel
Strand 8	A	316	321	parallel

Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	71	first strand
Strand 2	B	76	83	anti-parallel
Strand 3	B	148	153	anti-parallel
Strand 4	B	114	119	parallel
Strand 5	B	191	197	parallel
Strand 6	B	220	224	parallel
Strand 7	B	288	293	parallel
Strand 8	B	316	321	parallel

Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	71	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	148	153	anti-parallel
Strand 4	C	114	119	parallel
Strand 5	C	191	197	parallel
Strand 6	C	220	224	parallel
Strand 7	C	287	293	parallel
Strand 8	C	316	321	parallel

Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	71	first strand
Strand 2	D	76	83	anti-parallel
Strand 3	D	148	152	anti-parallel
Strand 4	D	114	119	parallel
Strand 5	D	191	197	parallel
Strand 6	D	220	224	parallel
Strand 7	D	288	293	parallel
Strand 8	D	316	321	parallel

Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	71	first strand
Strand 2	E	76	82	anti-parallel
Strand 3	E	148	153	anti-parallel
Strand 4	E	114	119	parallel
Strand 5	E	191	198	parallel
Strand 6	E	220	226	parallel
Strand 7	E	288	293	parallel
Strand 8	E	316	321	parallel

Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	71	first strand
Strand 2	F	76	83	anti-parallel
Strand 3	F	148	152	anti-parallel
Strand 4	F	114	119	parallel
Strand 5	F	191	197	parallel
Strand 6	F	220	224	parallel
Strand 7	F	288	293	parallel
Strand 8	F	316	321	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3EBL

Analysis of interatomic Contacts of Structural Units in PDB entry:
3EBL