Analysis of interatomic Contacts of Structural Units in PDB entry:
3ED8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ED8 entry

There are 10 chains in PDB entry 3ED8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 64
A
 LEU 68THR 254
B
 SER 2LEU 64
B
 LEU 68LEU 255
C
 SER 2LEU 64
C
 LEU 68LEU 255
D
 SER 2LEU 64
D
 LEU 68LEU 255
E
 LYS 3LEU 64
E
 LEU 68LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3ED8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed 310
Helix 2
2
A
56 61Right-handed 310
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
75 81Right-handed 310
Helix 5
5
A
82 87Right-handed alpha
Helix 6
6
B
3 9Right-handed 310
Helix 7
7
B
56 61Right-handed 310
Helix 8
8
B
68 72Right-handed 310
Helix 9
9
B
75 82Right-handed 310
Helix 10
10
C
4 9Right-handed 310
Helix 11
11
C
56 61Right-handed alpha
Helix 12
12
C
68 72Right-handed 310
Helix 13
13
C
75 82Right-handed 310
Helix 14
14
C
83 88Right-handed 310
Helix 15
15
D
3 9Right-handed 310
Helix 16
16
D
56 61Right-handed 310
Helix 17
17
D
68 72Right-handed 310
Helix 18
18
D
75 82Right-handed 310
Helix 19
19
D
84 88Right-handed 310
Helix 20
20
E
4 8Right-handed 310
Helix 21
21
E
56 61Right-handed 310
Helix 22
22
E
68 72Right-handed 310
Helix 23
23
E
75 82Right-handed 310
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There are 5 sheets in PDB entry 3ED8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
241 251anti-parallel
Strand 5
A
223 232anti-parallel
Strand 6
A
148 155anti-parallel
Strand 7
A
184 194anti-parallel
Strand 8
A
200 211anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 128anti-parallel
Strand 12
A
12 22parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
241 251anti-parallel
Strand 5
B
223 232anti-parallel
Strand 6
B
148 154anti-parallel
Strand 7
B
185 194anti-parallel
Strand 8
B
200 211anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
105 115anti-parallel
Strand 11
B
118 128anti-parallel
Strand 12
B
12 22parallel
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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 22first strand
Strand 2
C
25 36anti-parallel
Strand 3
C
41 48anti-parallel
Strand 4
C
241 251anti-parallel
Strand 5
C
223 232anti-parallel
Strand 6
C
148 155anti-parallel
Strand 7
C
184 194anti-parallel
Strand 8
C
200 211anti-parallel
Strand 9
C
92 100anti-parallel
Strand 10
C
105 115anti-parallel
Strand 11
C
118 128anti-parallel
Strand 12
C
12 22parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 22first strand
Strand 2
D
25 36anti-parallel
Strand 3
D
41 48anti-parallel
Strand 4
D
241 251anti-parallel
Strand 5
D
223 232anti-parallel
Strand 6
D
148 155anti-parallel
Strand 7
D
184 194anti-parallel
Strand 8
D
200 211anti-parallel
Strand 9
D
92 100anti-parallel
Strand 10
D
105 115anti-parallel
Strand 11
D
118 128anti-parallel
Strand 12
D
12 22parallel
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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 19first strand
Strand 2
E
28 36anti-parallel
Strand 3
E
41 48anti-parallel
Strand 4
E
242 251anti-parallel
Strand 5
E
223 232anti-parallel
Strand 6
E
148 154anti-parallel
Strand 7
E
185 194anti-parallel
Strand 8
E
200 211anti-parallel
Strand 9
E
92 100anti-parallel
Strand 10
E
105 114anti-parallel
Strand 11
E
119 128anti-parallel
Strand 12
E
12 19parallel
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