Analysis of interatomic Contacts of Structural Units in PDB entry:
3EDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EDC entry

There are 4 chains in PDB entry 3EDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 61GLN 360
B
 SER 61GLN 360
C
 SER 61GLN 360
D
 SER 61GLN 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3EDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 91Right-handed alpha
Helix 2
2
A
103 117Right-handed alpha
Helix 3
3
A
129 140Right-handed alpha
Helix 4
4
A
162 178Right-handed alpha
Helix 5
5
A
191 208Right-handed alpha
Helix 6
6
A
221 235Right-handed alpha
Helix 7
7
A
246 260Right-handed alpha
Helix 8
8
A
276 282Right-handed 310
Helix 9
9
A
292 309Right-handed alpha
Helix 10
10
A
338 355Right-handed alpha
Helix 11
11
B
73 91Right-handed alpha
Helix 12
12
B
103 116Right-handed alpha
Helix 13
13
B
129 140Right-handed alpha
Helix 14
14
B
162 177Right-handed alpha
Helix 15
15
B
191 208Right-handed alpha
Helix 16
16
B
221 236Right-handed alpha
Helix 17
17
B
246 260Right-handed alpha
Helix 18
18
B
276 282Right-handed 310
Helix 19
19
B
292 309Right-handed alpha
Helix 20
20
B
338 356Right-handed alpha
Helix 21
21
C
73 91Right-handed alpha
Helix 22
22
C
103 117Right-handed alpha
Helix 23
23
C
129 140Right-handed alpha
Helix 24
24
C
162 178Right-handed alpha
Helix 25
25
C
191 208Right-handed alpha
Helix 26
26
C
221 235Right-handed alpha
Helix 27
27
C
246 260Right-handed alpha
Helix 28
28
C
276 282Right-handed 310
Helix 29
29
C
292 309Right-handed alpha
Helix 30
30
C
338 355Right-handed alpha
Helix 31
31
D
73 90Right-handed alpha
Helix 32
32
D
103 117Right-handed alpha
Helix 33
33
D
129 140Right-handed alpha
Helix 34
34
D
162 178Right-handed alpha
Helix 35
35
D
191 208Right-handed alpha
Helix 36
36
D
221 235Right-handed alpha
Helix 37
37
D
246 260Right-handed alpha
Helix 38
38
D
276 282Right-handed 310
Helix 39
39
D
292 309Right-handed alpha
Helix 40
40
D
338 355Right-handed alpha
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There are 13 sheets in PDB entry 3EDC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
63 69parallel
Strand 3
A
121 125parallel
Strand 4
A
145 147parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
316 319parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
182 186parallel
Strand 3
A
241 244parallel
Strand 4
A
269 274parallel
Strand 5
A
287 290parallel
Strand 6
A
322 324anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 99first strand
Strand 2
B
63 69parallel
Strand 3
B
121 125parallel
Strand 4
B
145 147parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
316 319parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
182 186parallel
Strand 3
B
241 244parallel
Strand 4
B
269 274parallel
Strand 5
B
287 290parallel
Strand 6
B
322 324anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 98first strand
Strand 2
C
63 68parallel
Strand 3
C
121 125parallel
Strand 4
C
145 147parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 161first strand
Strand 2
C
316 319parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 217first strand
Strand 2
C
182 186parallel
Strand 3
C
241 244parallel
Strand 4
C
269 271parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 290first strand
Strand 2
C
322 324anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 98first strand
Strand 2
D
63 68parallel
Strand 3
D
121 125parallel
Strand 4
D
145 147parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 161first strand
Strand 2
D
316 319parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 217first strand
Strand 2
D
182 186parallel
Strand 3
D
241 244parallel
Strand 4
D
269 274parallel
Strand 5
D
287 290parallel
Strand 6
D
322 324anti-parallel
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