Analysis of interatomic Contacts of Structural Units in PDB entry:
3EDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EDJ entry

There are 2 chains in PDB entry 3EDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3PRO 599
B
 PRO 3PRO 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3EDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
113 118Right-handed alpha
Helix 3
3
A
121 125Right-handed 310
Helix 4
4
A
146 153Right-handed alpha
Helix 5
5
A
153 160Right-handed alpha
Helix 6
6
A
178 182Right-handed 310
Helix 7
7
A
197 211Right-handed alpha
Helix 8
8
A
228 233Right-handed 310
Helix 9
9
A
240 245Right-handed 310
Helix 10
10
A
252 258Right-handed 310
Helix 11
11
A
262 272Right-handed alpha
Helix 12
12
A
285 304Right-handed alpha
Helix 13
13
A
312 316Right-handed 310
Helix 14
14
A
317 332Right-handed alpha
Helix 15
15
A
345 351Right-handed alpha
Helix 16
16
A
371 384Right-handed alpha
Helix 17
17
A
391 400Right-handed alpha
Helix 18
18
A
401 404Right-handed 310
Helix 19
19
A
406 409Right-handed 310
Helix 20
20
A
421 426Right-handed alpha
Helix 21
21
A
429 443Right-handed alpha
Helix 22
22
A
452 456Right-handed 310
Helix 23
23
A
465 470Right-handed 310
Helix 24
24
A
491 510Right-handed alpha
Helix 25
25
A
511 517Right-handed alpha
Helix 26
26
A
558 563Right-handed alpha
Helix 27
27
B
31 35Right-handed 310
Helix 28
28
B
113 118Right-handed alpha
Helix 29
29
B
121 125Right-handed 310
Helix 30
30
B
146 153Right-handed alpha
Helix 31
31
B
153 160Right-handed alpha
Helix 32
32
B
178 182Right-handed 310
Helix 33
33
B
197 211Right-handed alpha
Helix 34
34
B
228 233Right-handed 310
Helix 35
35
B
240 245Right-handed 310
Helix 36
36
B
252 258Right-handed 310
Helix 37
37
B
262 272Right-handed alpha
Helix 38
38
B
285 304Right-handed alpha
Helix 39
39
B
312 316Right-handed 310
Helix 40
40
B
317 332Right-handed alpha
Helix 41
41
B
345 351Right-handed alpha
Helix 42
42
B
371 384Right-handed alpha
Helix 43
43
B
391 400Right-handed alpha
Helix 44
44
B
401 404Right-handed 310
Helix 45
45
B
406 409Right-handed 310
Helix 46
46
B
421 426Right-handed alpha
Helix 47
47
B
429 443Right-handed alpha
Helix 48
48
B
452 456Right-handed 310
Helix 49
49
B
465 470Right-handed 310
Helix 50
50
B
491 510Right-handed alpha
Helix 51
51
B
511 517Right-handed alpha
Helix 52
52
B
558 563Right-handed alpha
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There are 13 sheets in PDB entry 3EDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
57 64anti-parallel
Strand 4
A
44 46anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
82 91parallel
Strand 3
A
71 79anti-parallel
Strand 4
A
36 38anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
336 339parallel
Strand 3
A
307 310parallel
Strand 4
A
214 219parallel
Strand 5
A
164 167parallel
Strand 6
A
109 112parallel
Strand 7
A
446 450parallel
Strand 8
A
411 413parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
187 191anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 521first strand
Strand 2
A
528 534anti-parallel
Strand 3
A
538 545anti-parallel
Strand 4
A
590 596anti-parallel
Strand 5
A
567 570anti-parallel
Strand 6
A
576 578anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 554first strand
Strand 2
A
582 585anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
22 28anti-parallel
Strand 3
B
57 64anti-parallel
Strand 4
B
44 46anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
82 91parallel
Strand 3
B
71 79anti-parallel
Strand 4
B
36 38anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
336 339parallel
Strand 3
B
307 310parallel
Strand 4
B
214 219parallel
Strand 5
B
164 167parallel
Strand 6
B
109 112parallel
Strand 7
B
446 450parallel
Strand 8
B
411 413parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
187 191anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 521first strand
Strand 2
B
528 534anti-parallel
Strand 3
B
538 545anti-parallel
Strand 4
B
590 596anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
551 554first strand
Strand 2
B
582 585anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
567 569first strand
Strand 2
B
576 578anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il