Analysis of interatomic Contacts of Structural Units in PDB entry:
3EDL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3EDL entry

There are 5 chains in PDB entry 3EDL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	SER 439
B	ARG 2	ASP 437
D	ILE 73	SER 403
F	ARG 2	VAL 437
G	ARG 2	ALA 438

There are 83 helices in PDB entry 3EDL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	27	Right-handed alpha
Helix 2	2	A	71	81	Right-handed alpha
Helix 3	3	A	102	108	Right-handed alpha
Helix 4	4	A	108	129	Right-handed alpha
Helix 5	5	A	147	161	Right-handed alpha
Helix 6	6	A	183	195	Right-handed alpha
Helix 7	7	A	205	216	Right-handed alpha
Helix 8	8	A	223	243	Right-handed alpha
Helix 9	9	A	251	260	Right-handed alpha
Helix 10	10	A	287	292	Right-handed alpha
Helix 11	11	A	292	297	Right-handed alpha
Helix 12	12	A	324	337	Right-handed alpha
Helix 13	13	A	384	400	Right-handed alpha
Helix 14	14	A	401	404	Right-handed 310
Helix 15	15	A	405	410	Right-handed alpha
Helix 16	16	A	414	430	Right-handed alpha
Helix 17	17	A	430	435	Right-handed alpha
Helix 18	18	B	11	27	Right-handed alpha
Helix 19	19	B	48	53	Right-handed 310
Helix 20	20	B	71	79	Right-handed alpha
Helix 21	21	B	82	86	Right-handed 310
Helix 22	22	B	88	90	Right-handed 310
Helix 23	23	B	110	127	Right-handed alpha
Helix 24	24	B	143	161	Right-handed alpha
Helix 25	25	B	183	195	Right-handed alpha
Helix 26	26	B	205	215	Right-handed alpha
Helix 27	27	B	223	243	Right-handed alpha
Helix 28	28	B	251	260	Right-handed alpha
Helix 29	29	B	288	296	Right-handed alpha
Helix 30	30	B	306	310	Right-handed 310
Helix 31	31	B	324	339	Right-handed alpha
Helix 32	32	B	384	400	Right-handed alpha
Helix 33	33	B	402	404	Right-handed 310
Helix 34	34	B	405	410	Right-handed alpha
Helix 35	35	B	414	437	Right-handed alpha
Helix 36	36	D	83	89	Right-handed alpha
Helix 37	37	D	134	142	Right-handed alpha
Helix 38	38	D	143	145	Right-handed 310
Helix 39	39	D	146	152	Right-handed alpha
Helix 40	40	D	167	174	Right-handed alpha
Helix 41	41	D	182	185	Right-handed 310
Helix 42	42	D	186	200	Right-handed alpha
Helix 43	43	D	201	206	Right-handed alpha
Helix 44	44	D	255	269	Right-handed alpha
Helix 45	45	D	326	345	Right-handed alpha
Helix 46	46	D	356	362	Right-handed alpha
Helix 47	47	D	363	368	Right-handed alpha
Helix 48	48	D	382	384	Right-handed 310
Helix 49	49	D	385	401	Right-handed alpha
Helix 50	50	F	10	29	Right-handed alpha
Helix 51	51	F	48	52	Right-handed 310
Helix 52	52	F	73	79	Right-handed alpha
Helix 53	53	F	102	108	Right-handed alpha
Helix 54	54	F	108	126	Right-handed alpha
Helix 55	55	F	143	161	Right-handed alpha
Helix 56	56	F	182	196	Right-handed alpha
Helix 57	57	F	206	216	Right-handed alpha
Helix 58	58	F	223	241	Right-handed alpha
Helix 59	59	F	255	259	Right-handed 310
Helix 60	60	F	287	294	Right-handed alpha
Helix 61	61	F	297	301	Right-handed 310
Helix 62	62	F	324	338	Right-handed alpha
Helix 63	63	F	382	384	Right-handed 310
Helix 64	64	F	385	400	Right-handed alpha
Helix 65	65	F	405	412	Right-handed alpha
Helix 66	66	F	414	435	Right-handed alpha
Helix 67	67	G	10	29	Right-handed alpha
Helix 68	68	G	41	53	Right-handed 310
Helix 69	69	G	72	80	Right-handed alpha
Helix 70	70	G	88	90	Right-handed 310
Helix 71	71	G	102	108	Right-handed alpha
Helix 72	72	G	108	129	Right-handed alpha
Helix 73	73	G	149	158	Right-handed alpha
Helix 74	74	G	182	198	Right-handed alpha
Helix 75	75	G	206	215	Right-handed alpha
Helix 76	76	G	227	244	Right-handed alpha
Helix 77	77	G	253	260	Right-handed alpha
Helix 78	78	G	288	296	Right-handed alpha
Helix 79	79	G	297	301	Right-handed 310
Helix 80	80	G	324	339	Right-handed alpha
Helix 81	81	G	384	396	Right-handed alpha
Helix 82	82	G	405	410	Right-handed alpha
Helix 83	83	G	415	433	Right-handed alpha

There are 10 sheets in PDB entry 3EDL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	139	parallel
Strand 5	A	167	170	parallel
Strand 6	A	200	203	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	355	parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	6	9	parallel
Strand 4	B	134	139	parallel
Strand 5	B	165	170	parallel
Strand 6	B	200	202	parallel
Strand 7	B	267	271	parallel
Strand 8	B	375	381	anti-parallel
Strand 9	B	312	320	anti-parallel
Strand 10	B	351	356	parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	74	79	parallel
Strand 3	D	371	379	parallel
Strand 4	D	155	162	parallel
Strand 5	D	298	306	parallel
Strand 6	D	285	293	anti-parallel
Strand 7	D	210	219	anti-parallel
Strand 8	D	222	225	anti-parallel
Strand 9	D	232	237	anti-parallel
Strand 10	D	243	246	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	74	79	parallel
Strand 3	D	371	379	parallel
Strand 4	D	155	162	parallel
Strand 5	D	298	306	parallel
Strand 6	D	285	293	anti-parallel
Strand 7	D	210	219	anti-parallel
Strand 8	D	251	253	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	102	110	anti-parallel
Strand 3	D	116	124	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	94	first strand
Strand 2	F	65	69	parallel
Strand 3	F	5	9	parallel
Strand 4	F	134	140	parallel
Strand 5	F	165	172	parallel
Strand 6	F	200	205	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	270	first strand
Strand 2	F	378	379	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	352	356	first strand
Strand 2	F	316	321	parallel
Strand 3	F	373	374	anti-parallel

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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	93	first strand
Strand 2	G	65	68	parallel
Strand 3	G	4	9	parallel
Strand 4	G	134	140	parallel
Strand 5	G	165	172	parallel
Strand 6	G	200	205	parallel
Strand 7	G	267	272	parallel
Strand 8	G	374	381	anti-parallel
Strand 9	G	312	320	anti-parallel
Strand 10	G	351	356	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3EDL

Analysis of interatomic Contacts of Structural Units in PDB entry:
3EDL