Analysis of interatomic Contacts of Structural Units in PDB entry:
3EDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EDM entry

There are 4 chains in PDB entry 3EDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2SER 249
B
 GLN 2SER 249
C
 GLN 2GLY 244
D
 GLN 2GLY 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3EDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
41 53Right-handed alpha
Helix 3
3
A
67 83Right-handed alpha
Helix 4
4
A
105 117Right-handed alpha
Helix 5
5
A
117 128Right-handed alpha
Helix 6
6
A
142 148Right-handed alpha
Helix 7
7
A
153 175Right-handed alpha
Helix 8
8
A
216 229Right-handed alpha
Helix 9
9
A
230 233Right-handed 310
Helix 10
10
B
16 29Right-handed alpha
Helix 11
11
B
41 53Right-handed alpha
Helix 12
12
B
67 83Right-handed alpha
Helix 13
13
B
105 117Right-handed alpha
Helix 14
14
B
117 128Right-handed alpha
Helix 15
15
B
142 148Right-handed alpha
Helix 16
16
B
153 175Right-handed alpha
Helix 17
17
B
216 229Right-handed alpha
Helix 18
18
B
230 233Right-handed 310
Helix 19
19
C
16 29Right-handed alpha
Helix 20
20
C
41 54Right-handed alpha
Helix 21
21
C
67 83Right-handed alpha
Helix 22
22
C
100 104Right-handed 310
Helix 23
23
C
105 117Right-handed alpha
Helix 24
24
C
117 128Right-handed alpha
Helix 25
25
C
142 148Right-handed alpha
Helix 26
26
C
153 175Right-handed alpha
Helix 27
27
C
216 229Right-handed alpha
Helix 28
28
C
230 233Right-handed 310
Helix 29
29
D
16 29Right-handed alpha
Helix 30
30
D
41 53Right-handed alpha
Helix 31
31
D
67 83Right-handed alpha
Helix 32
32
D
105 117Right-handed alpha
Helix 33
33
D
117 128Right-handed alpha
Helix 34
34
D
142 148Right-handed alpha
Helix 35
35
D
153 175Right-handed alpha
Helix 36
36
D
216 229Right-handed alpha
Helix 37
37
D
230 233Right-handed 310
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There are 4 sheets in PDB entry 3EDM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
32 37parallel
Strand 3
A
8 12parallel
Strand 4
A
85 90parallel
Strand 5
A
131 140parallel
Strand 6
A
179 185parallel
Strand 7
A
239 242parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
32 37parallel
Strand 3
B
8 12parallel
Strand 4
B
85 90parallel
Strand 5
B
131 140parallel
Strand 6
B
179 188parallel
Strand 7
B
239 248parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
32 37parallel
Strand 3
C
8 12parallel
Strand 4
C
85 90parallel
Strand 5
C
131 140parallel
Strand 6
C
179 184parallel
Strand 7
C
239 241parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 62first strand
Strand 2
D
32 37parallel
Strand 3
D
8 12parallel
Strand 4
D
85 90parallel
Strand 5
D
131 140parallel
Strand 6
D
179 184parallel
Strand 7
D
239 241parallel
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