Analysis of interatomic Contacts of Structural Units in PDB entry:
3EDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EDP entry

There are 2 chains in PDB entry 3EDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ASN 233
B
 LYS 5ASN 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3EDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 21Right-handed alpha
Helix 2
2
A
32 40Right-handed alpha
Helix 3
3
A
43 57Right-handed alpha
Helix 4
4
A
75 84Right-handed alpha
Helix 5
5
A
106 115Right-handed alpha
Helix 6
6
A
145 147Right-handed 310
Helix 7
7
A
151 155Right-handed 310
Helix 8
8
A
159 165Right-handed alpha
Helix 9
9
A
184 192Right-handed alpha
Helix 10
10
B
6 21Right-handed alpha
Helix 11
11
B
32 40Right-handed alpha
Helix 12
12
B
43 57Right-handed alpha
Helix 13
13
B
75 84Right-handed alpha
Helix 14
14
B
106 115Right-handed alpha
Helix 15
15
B
145 147Right-handed 310
Helix 16
16
B
151 155Right-handed 310
Helix 17
17
B
159 165Right-handed alpha
Helix 18
18
B
184 192Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3EDP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 105first strand
Strand 2
A
121 131anti-parallel
Strand 3
A
134 143anti-parallel
Strand 4
A
212 222anti-parallel
Strand 5
A
198 208anti-parallel
Strand 6
A
173 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
B
228 232anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 105first strand
Strand 2
B
121 131anti-parallel
Strand 3
B
134 143anti-parallel
Strand 4
B
212 222anti-parallel
Strand 5
B
198 208anti-parallel
Strand 6
B
173 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il