Analysis of interatomic Contacts of Structural Units in PDB entry:
3EEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EEB entry

There are 2 chains in PDB entry 3EEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TRP 205
B
 ILE 5TRP 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3EEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
41 55Right-handed alpha
Helix 3
3
A
56 59Right-handed 310
Helix 4
4
A
76 80Right-handed 310
Helix 5
5
A
107 126Right-handed alpha
Helix 6
6
A
150 162Right-handed alpha
Helix 7
7
A
196 198Right-handed 310
Helix 8
8
B
10 14Right-handed 310
Helix 9
9
B
41 55Right-handed alpha
Helix 10
10
B
76 80Right-handed 310
Helix 11
11
B
107 127Right-handed alpha
Helix 12
12
B
150 162Right-handed alpha
Helix 13
13
B
196 198Right-handed 310
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There are 6 sheets in PDB entry 3EEB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
32 37parallel
Strand 4
A
84 89parallel
Strand 5
A
132 138parallel
Strand 6
A
167 171parallel
Strand 7
A
200 203anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
102 103anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
183 186anti-parallel
Strand 3
A
192 193anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
59 64anti-parallel
Strand 3
B
32 37parallel
Strand 4
B
84 89parallel
Strand 5
B
132 138parallel
Strand 6
B
167 171parallel
Strand 7
B
200 203anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
102 103anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
183 186anti-parallel
Strand 3
B
192 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il