Analysis of interatomic Contacts of Structural Units in PDB entry:
3EED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EED entry

There are 2 chains in PDB entry 3EED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6HIS 193
B
 GLU 6HIS 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3EED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 16Right-handed alpha
Helix 2
2
A
26 32Right-handed alpha
Helix 3
3
A
33 37Right-handed 310
Helix 4
4
A
38 42Right-handed 310
Helix 5
5
A
45 54Right-handed alpha
Helix 6
6
A
68 88Right-handed alpha
Helix 7
7
A
90 103Right-handed alpha
Helix 8
8
A
111 115Right-handed 310
Helix 9
9
A
148 152Right-handed 310
Helix 10
10
A
155 159Right-handed 310
Helix 11
11
A
162 171Right-handed alpha
Helix 12
12
A
172 175Right-handed 310
Helix 13
13
B
8 15Right-handed alpha
Helix 14
14
B
26 31Right-handed alpha
Helix 15
15
B
32 37Right-handed 310
Helix 16
16
B
38 42Right-handed 310
Helix 17
17
B
45 54Right-handed alpha
Helix 18
18
B
69 88Right-handed alpha
Helix 19
19
B
90 103Right-handed alpha
Helix 20
20
B
111 115Right-handed 310
Helix 21
21
B
148 152Right-handed 310
Helix 22
22
B
155 159Right-handed 310
Helix 23
23
B
162 171Right-handed alpha
Helix 24
24
B
172 175Right-handed 310
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There are 4 sheets in PDB entry 3EED. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
142 144anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
190 191anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
134 137anti-parallel
Strand 3
B
142 144anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
B
190 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il