Analysis of interatomic Contacts of Structural Units in PDB entry:
3EEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EEF entry

There are 2 chains in PDB entry 3EEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 173
B
 MSE 1GLY 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3EEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
21 41Right-handed alpha
Helix 3
3
A
58 63Right-handed alpha
Helix 4
4
A
70 74Right-handed 310
Helix 5
5
A
76 80Right-handed 310
Helix 6
6
A
100 108Right-handed alpha
Helix 7
7
A
122 134Right-handed alpha
Helix 8
8
A
152 162Right-handed alpha
Helix 9
9
B
11 16Right-handed alpha
Helix 10
10
B
21 26Right-handed 310
Helix 11
11
B
27 41Right-handed alpha
Helix 12
12
B
58 63Right-handed alpha
Helix 13
13
B
70 74Right-handed 310
Helix 14
14
B
76 80Right-handed 310
Helix 15
15
B
100 108Right-handed alpha
Helix 16
16
B
122 134Right-handed alpha
Helix 17
17
B
152 162Right-handed alpha
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There are 2 sheets in PDB entry 3EEF. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
45 50parallel
Strand 3
A
3 8parallel
Strand 4
A
112 118parallel
Strand 5
A
137 146parallel
Strand 6
A
164 166parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
45 50parallel
Strand 3
B
3 8parallel
Strand 4
B
112 118parallel
Strand 5
B
137 146parallel
Strand 6
B
164 166parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il