Analysis of interatomic Contacts of Structural Units in PDB entry:
3EEG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EEG entry

There are 2 chains in PDB entry 3EEG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2MSE 279
B
 GLY 2MSE 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3EEG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 14Right-handed 310
Helix 2
2
A
26 39Right-handed alpha
Helix 3
3
A
51 65Right-handed alpha
Helix 4
4
A
77 89Right-handed alpha
Helix 5
5
A
103 108Right-handed alpha
Helix 6
6
A
117 121Right-handed 310
Helix 7
7
A
122 131Right-handed alpha
Helix 8
8
A
142 146Right-handed 310
Helix 9
9
A
147 162Right-handed alpha
Helix 10
10
A
176 191Right-handed alpha
Helix 11
11
A
193 197Right-handed 310
Helix 12
12
A
209 221Right-handed alpha
Helix 13
13
A
228 232Right-handed 310
Helix 14
14
A
240 251Right-handed alpha
Helix 15
15
A
251 256Right-handed alpha
Helix 16
16
A
262 264Right-handed 310
Helix 17
17
A
265 277Right-handed alpha
Helix 18
18
B
10 15Right-handed alpha
Helix 19
19
B
24 37Right-handed alpha
Helix 20
20
B
51 63Right-handed alpha
Helix 21
21
B
77 89Right-handed alpha
Helix 22
22
B
103 110Right-handed alpha
Helix 23
23
B
121 133Right-handed alpha
Helix 24
24
B
147 160Right-handed alpha
Helix 25
25
B
176 191Right-handed alpha
Helix 26
26
B
193 197Right-handed 310
Helix 27
27
B
209 219Right-handed alpha
Helix 28
28
B
228 232Right-handed 310
Helix 29
29
B
240 250Right-handed alpha
Helix 30
30
B
251 256Right-handed alpha
Helix 31
31
B
262 264Right-handed 310
Helix 32
32
B
265 277Right-handed alpha
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There are 4 sheets in PDB entry 3EEG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
257 258parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
42 46parallel
Strand 3
A
69 73parallel
Strand 4
A
94 101parallel
Strand 5
A
135 141parallel
Strand 6
A
165 167parallel
Strand 7
A
198 201parallel
Strand 8
A
224 227parallel
Strand 9
A
6 9parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
257 258parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
42 46parallel
Strand 3
B
69 74parallel
Strand 4
B
94 101parallel
Strand 5
B
135 141parallel
Strand 6
B
165 169parallel
Strand 7
B
198 202parallel
Strand 8
B
224 227parallel
Strand 9
B
6 9parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il