Analysis of interatomic Contacts of Structural Units in PDB entry:
3EEI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EEI entry

There are 2 chains in PDB entry 3EEI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LEU 233
B
 LEU 3LEU 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3EEI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
54 70Right-handed alpha
Helix 3
3
A
105 109Right-handed 310
Helix 4
4
A
125 138Right-handed alpha
Helix 5
5
A
158 169Right-handed alpha
Helix 6
6
A
178 189Right-handed alpha
Helix 7
7
A
206 233Right-handed alpha
Helix 8
8
B
12 23Right-handed alpha
Helix 9
9
B
54 70Right-handed alpha
Helix 10
10
B
105 109Right-handed 310
Helix 11
11
B
125 138Right-handed alpha
Helix 12
12
B
158 169Right-handed alpha
Helix 13
13
B
178 189Right-handed alpha
Helix 14
14
B
206 232Right-handed alpha
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There are 4 sheets in PDB entry 3EEI. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
5 10parallel
Strand 5
A
73 76parallel
Strand 6
A
193 201parallel
Strand 7
A
79 82parallel
Strand 8
A
172 176anti-parallel
Strand 9
A
144 151parallel
Strand 10
A
92 100parallel
Strand 11
A
122 123anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
5 10parallel
Strand 5
A
73 76parallel
Strand 6
A
193 201parallel
Strand 7
A
92 100anti-parallel
Strand 8
A
122 123anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 31first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
44 50anti-parallel
Strand 4
B
5 10parallel
Strand 5
B
73 76parallel
Strand 6
B
193 201parallel
Strand 7
B
79 82parallel
Strand 8
B
174 176anti-parallel
Strand 9
B
144 151parallel
Strand 10
B
92 100parallel
Strand 11
B
122 123anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 31first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
44 50anti-parallel
Strand 4
B
5 10parallel
Strand 5
B
73 76parallel
Strand 6
B
193 201parallel
Strand 7
B
92 100anti-parallel
Strand 8
B
122 123anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il