Analysis of interatomic Contacts of Structural Units in PDB entry:
3EEQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EEQ entry

There are 2 chains in PDB entry 3EEQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLU 335
B
 SER 8HIS 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3EEQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 13Right-handed 310
Helix 2
2
A
23 40Right-handed alpha
Helix 3
3
A
50 52Right-handed 310
Helix 4
4
A
53 58Right-handed alpha
Helix 5
5
A
69 81Right-handed alpha
Helix 6
6
A
109 121Right-handed alpha
Helix 7
7
A
138 146Right-handed alpha
Helix 8
8
A
152 154Right-handed 310
Helix 9
9
A
155 165Right-handed alpha
Helix 10
10
A
227 243Right-handed alpha
Helix 11
11
A
245 247Right-handed 310
Helix 12
12
A
258 267Right-handed alpha
Helix 13
13
A
274 280Right-handed alpha
Helix 14
14
A
300 311Right-handed alpha
Helix 15
15
B
9 13Right-handed 310
Helix 16
16
B
23 39Right-handed alpha
Helix 17
17
B
53 61Right-handed alpha
Helix 18
18
B
69 81Right-handed alpha
Helix 19
19
B
109 121Right-handed alpha
Helix 20
20
B
138 147Right-handed alpha
Helix 21
21
B
152 154Right-handed 310
Helix 22
22
B
155 165Right-handed alpha
Helix 23
23
B
227 242Right-handed alpha
Helix 24
24
B
245 247Right-handed 310
Helix 25
25
B
256 258Right-handed 310
Helix 26
26
B
259 266Right-handed alpha
Helix 27
27
B
274 281Right-handed alpha
Helix 28
28
B
300 311Right-handed alpha
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There are 6 sheets in PDB entry 3EEQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
17 21parallel
Strand 3
A
63 67parallel
Strand 4
A
89 93parallel
Strand 5
A
99 104anti-parallel
Strand 6
A
124 125parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
207 213anti-parallel
Strand 3
A
193 196parallel
Strand 4
A
169 172parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
249 254parallel
Strand 3
A
215 222parallel
Strand 4
A
327 334anti-parallel
Strand 5
A
316 324anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
17 21parallel
Strand 3
B
63 67parallel
Strand 4
B
89 93parallel
Strand 5
B
99 104anti-parallel
Strand 6
B
124 125parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
207 213anti-parallel
Strand 3
B
193 196parallel
Strand 4
B
169 172parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 272first strand
Strand 2
B
249 254parallel
Strand 3
B
215 222parallel
Strand 4
B
327 334anti-parallel
Strand 5
B
316 324anti-parallel
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