Analysis of interatomic Contacts of Structural Units in PDB entry:
3EEZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EEZ entry

There is 1 chain in PDB entry 3EEZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3EEZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 77Right-handed alpha
Helix 2
2
A
83 95Right-handed alpha
Helix 3
3
A
98 117Right-handed alpha
Helix 4
4
A
120 125Right-handed alpha
Helix 5
5
A
143 157Right-handed alpha
Helix 6
6
A
169 181Right-handed alpha
Helix 7
7
A
199 210Right-handed alpha
Helix 8
8
A
211 214Right-handed 310
Helix 9
9
A
223 230Right-handed alpha
Helix 10
10
A
231 234Right-handed 310
Helix 11
11
A
246 256Right-handed alpha
Helix 12
12
A
266 270Right-handed alpha
Helix 13
13
A
271 285Right-handed alpha
Helix 14
14
A
297 310Right-handed alpha
Helix 15
15
A
311 316Right-handed 310
Helix 16
16
A
322 326Right-handed 310
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There are 3 sheets in PDB entry 3EEZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
30 40anti-parallel
Strand 3
A
3 14anti-parallel
Strand 4
A
365 367anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
342 343anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
189 193parallel
Strand 3
A
217 218parallel
Strand 4
A
238 240parallel
Strand 5
A
261 265parallel
Strand 6
A
288 292parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il