Analysis of interatomic Contacts of Structural Units in PDB entry:
3EF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EF0 entry

There is 1 chain in PDB entry 3EF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 150TYR 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3EF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
150 163Right-handed alpha
Helix 2
2
A
182 189Right-handed alpha
Helix 3
3
A
196 200Right-handed 310
Helix 4
4
A
225 235Right-handed alpha
Helix 5
5
A
246 258Right-handed alpha
Helix 6
6
A
281 285Right-handed 310
Helix 7
7
A
300 304Right-handed 310
Helix 8
8
A
398 401Right-handed 310
Helix 9
9
A
402 416Right-handed alpha
Helix 10
10
A
416 428Right-handed alpha
Helix 11
11
A
433 437Right-handed 310
Helix 12
12
A
444 471Right-handed alpha
Helix 13
13
A
478 488Right-handed alpha
Helix 14
14
A
511 520Right-handed alpha
Helix 15
15
A
542 551Right-handed alpha
Helix 16
16
A
559 568Right-handed alpha
Helix 17
17
A
573 578Right-handed 310
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There are 3 sheets in PDB entry 3EF0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
237 242parallel
Strand 3
A
165 169parallel
Strand 4
A
293 297parallel
Strand 5
A
309 311parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
214 222anti-parallel
Strand 3
A
203 209anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 524first strand
Strand 2
A
495 499parallel
Strand 3
A
534 537parallel
Strand 4
A
556 558parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il