Analysis of interatomic Contacts of Structural Units in PDB entry:
3EFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EFB entry

There are 4 chains in PDB entry 3EFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11LYS 265
B
 GLU 11LYS 265
C
 GLU 11LEU 264
D
 ASN 10LYS 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3EFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 24Right-handed alpha
Helix 2
2
A
37 57Right-handed alpha
Helix 3
3
A
68 77Right-handed alpha
Helix 4
4
A
101 104Right-handed 310
Helix 5
5
A
105 117Right-handed alpha
Helix 6
6
A
132 141Right-handed alpha
Helix 7
7
A
142 154Right-handed alpha
Helix 8
8
A
178 188Right-handed alpha
Helix 9
9
A
210 214Right-handed 310
Helix 10
10
A
218 224Right-handed alpha
Helix 11
11
A
239 247Right-handed alpha
Helix 12
12
A
257 265Right-handed alpha
Helix 13
13
B
11 24Right-handed alpha
Helix 14
14
B
37 57Right-handed alpha
Helix 15
15
B
68 77Right-handed alpha
Helix 16
16
B
101 104Right-handed 310
Helix 17
17
B
105 118Right-handed alpha
Helix 18
18
B
132 142Right-handed alpha
Helix 19
19
B
142 153Right-handed alpha
Helix 20
20
B
172 177Right-handed alpha
Helix 21
21
B
210 214Right-handed 310
Helix 22
22
B
218 224Right-handed alpha
Helix 23
23
B
237 247Right-handed alpha
Helix 24
24
B
257 265Right-handed alpha
Helix 25
25
C
12 24Right-handed alpha
Helix 26
26
C
37 57Right-handed alpha
Helix 27
27
C
68 78Right-handed alpha
Helix 28
28
C
101 104Right-handed 310
Helix 29
29
C
105 117Right-handed alpha
Helix 30
30
C
132 142Right-handed alpha
Helix 31
31
C
142 153Right-handed alpha
Helix 32
32
C
210 214Right-handed 310
Helix 33
33
C
218 224Right-handed alpha
Helix 34
34
C
237 247Right-handed alpha
Helix 35
35
C
257 264Right-handed alpha
Helix 36
36
D
10 24Right-handed alpha
Helix 37
37
D
37 57Right-handed alpha
Helix 38
38
D
68 77Right-handed alpha
Helix 39
39
D
101 104Right-handed 310
Helix 40
40
D
105 117Right-handed alpha
Helix 41
41
D
132 140Right-handed alpha
Helix 42
42
D
142 154Right-handed alpha
Helix 43
43
D
172 188Right-handed alpha
Helix 44
44
D
218 223Right-handed alpha
Helix 45
45
D
237 247Right-handed alpha
Helix 46
46
D
257 265Right-handed alpha
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There are 8 sheets in PDB entry 3EFB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
252 256parallel
Strand 3
A
227 231parallel
Strand 4
A
157 160parallel
Strand 5
A
62 65parallel
Strand 6
A
88 91parallel
Strand 7
A
120 121parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
197 199anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
252 256parallel
Strand 3
B
227 231parallel
Strand 4
B
157 160parallel
Strand 5
B
62 65parallel
Strand 6
B
88 91parallel
Strand 7
B
120 121parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
197 199anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 31first strand
Strand 2
C
252 256parallel
Strand 3
C
227 231parallel
Strand 4
C
157 160parallel
Strand 5
C
62 65parallel
Strand 6
C
88 91parallel
Strand 7
C
120 121parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
198 200anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 31first strand
Strand 2
D
252 256parallel
Strand 3
D
227 231parallel
Strand 4
D
157 161parallel
Strand 5
D
62 65parallel
Strand 6
D
88 91parallel
Strand 7
D
120 121parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 194first strand
Strand 2
D
197 199anti-parallel
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