Analysis of interatomic Contacts of Structural Units in PDB entry:
3EFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EFE entry

There are 6 chains in PDB entry 3EFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LYS 210
B
 GLN -1LYS 210
C
 LYS 4ASN 209
D
 GLN 2LYS 210
E
 THR 3LYS 210
F
 THR 3ASN 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3EFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 29Right-handed alpha
Helix 2
2
A
66 68Right-handed 310
Helix 3
3
A
86 88Right-handed 310
Helix 4
4
A
89 103Right-handed alpha
Helix 5
5
A
110 119Right-handed alpha
Helix 6
6
A
131 139Right-handed alpha
Helix 7
7
A
166 179Right-handed alpha
Helix 8
8
A
182 196Right-handed alpha
Helix 9
9
A
198 206Right-handed alpha
Helix 10
10
B
19 29Right-handed alpha
Helix 11
11
B
86 88Right-handed 310
Helix 12
12
B
89 103Right-handed alpha
Helix 13
13
B
110 118Right-handed alpha
Helix 14
14
B
131 139Right-handed alpha
Helix 15
15
B
144 148Right-handed 310
Helix 16
16
B
166 179Right-handed alpha
Helix 17
17
B
182 196Right-handed alpha
Helix 18
18
B
198 206Right-handed alpha
Helix 19
19
C
15 18Right-handed 310
Helix 20
20
C
19 29Right-handed alpha
Helix 21
21
C
66 68Right-handed 310
Helix 22
22
C
86 88Right-handed 310
Helix 23
23
C
89 103Right-handed alpha
Helix 24
24
C
110 119Right-handed alpha
Helix 25
25
C
131 139Right-handed alpha
Helix 26
26
C
144 148Right-handed 310
Helix 27
27
C
166 179Right-handed alpha
Helix 28
28
C
182 196Right-handed alpha
Helix 29
29
C
197 206Right-handed alpha
Helix 30
30
D
15 29Right-handed alpha
Helix 31
31
D
86 88Right-handed 310
Helix 32
32
D
89 103Right-handed alpha
Helix 33
33
D
110 118Right-handed alpha
Helix 34
34
D
131 139Right-handed alpha
Helix 35
35
D
166 178Right-handed alpha
Helix 36
36
D
182 196Right-handed alpha
Helix 37
37
D
198 208Right-handed alpha
Helix 38
38
E
15 18Right-handed 310
Helix 39
39
E
19 29Right-handed alpha
Helix 40
40
E
89 102Right-handed alpha
Helix 41
41
E
110 118Right-handed alpha
Helix 42
42
E
131 139Right-handed alpha
Helix 43
43
E
166 179Right-handed alpha
Helix 44
44
E
182 196Right-handed alpha
Helix 45
45
E
197 208Right-handed alpha
Helix 46
46
F
19 29Right-handed alpha
Helix 47
47
F
86 88Right-handed 310
Helix 48
48
F
89 103Right-handed alpha
Helix 49
49
F
110 118Right-handed alpha
Helix 50
50
F
131 139Right-handed alpha
Helix 51
51
F
166 179Right-handed alpha
Helix 52
52
F
182 196Right-handed alpha
Helix 53
53
F
197 209Right-handed alpha
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There are 11 sheets in PDB entry 3EFE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
41 45parallel
Strand 3
A
6 10parallel
Strand 4
A
75 78parallel
Strand 5
A
105 109parallel
Strand 6
A
159 162parallel
Strand 7
A
153 156anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
58 59anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
41 45parallel
Strand 3
B
6 10parallel
Strand 4
B
75 78parallel
Strand 5
B
105 109parallel
Strand 6
B
159 162parallel
Strand 7
B
153 156anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
58 59anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
41 45parallel
Strand 3
C
6 9parallel
Strand 4
C
75 78parallel
Strand 5
C
105 109parallel
Strand 6
C
159 162parallel
Strand 7
C
153 156anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
58 59anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 64first strand
Strand 2
D
41 45parallel
Strand 3
D
6 9parallel
Strand 4
D
75 78parallel
Strand 5
D
105 109parallel
Strand 6
D
159 162parallel
Strand 7
D
153 156anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
58 59anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
63 64first strand
Strand 2
E
41 45parallel
Strand 3
E
6 9parallel
Strand 4
E
75 78parallel
Strand 5
E
105 109parallel
Strand 6
E
159 162parallel
Strand 7
E
153 156anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 52first strand
Strand 2
E
58 59anti-parallel
Strand 3
F
58 60anti-parallel
Strand 4
F
51 52anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
63 64first strand
Strand 2
F
41 45parallel
Strand 3
F
6 10parallel
Strand 4
F
75 78parallel
Strand 5
F
105 109parallel
Strand 6
F
159 162parallel
Strand 7
F
153 156anti-parallel
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