Analysis of interatomic Contacts of Structural Units in PDB entry:
3EFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EFR entry

There are 2 chains in PDB entry 3EFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 233
B
 MET 1SER 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3EFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
67 86Right-handed alpha
Helix 4
4
A
139 145Right-handed alpha
Helix 5
5
A
149 171Right-handed alpha
Helix 6
6
A
173 182Right-handed alpha
Helix 7
7
B
13 21Right-handed alpha
Helix 8
8
B
44 48Right-handed 310
Helix 9
9
B
59 63Right-handed 310
Helix 10
10
B
67 86Right-handed alpha
Helix 11
11
B
130 134Right-handed 310
Helix 12
12
B
139 145Right-handed alpha
Helix 13
13
B
149 171Right-handed alpha
Helix 14
14
B
173 182Right-handed alpha
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There are 4 sheets in PDB entry 3EFR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
27 31parallel
Strand 3
A
51 58anti-parallel
Strand 4
A
115 123anti-parallel
Strand 5
A
102 112anti-parallel
Strand 6
A
96 99anti-parallel
Strand 7
A
90 92anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 223first strand
Strand 2
A
212 216anti-parallel
Strand 3
A
198 206anti-parallel
Strand 4
A
190 194anti-parallel
Strand 5
A
229 232anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
28 31parallel
Strand 3
B
51 58anti-parallel
Strand 4
B
115 123anti-parallel
Strand 5
B
102 112anti-parallel
Strand 6
B
96 99anti-parallel
Strand 7
B
90 92anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 223first strand
Strand 2
B
212 216anti-parallel
Strand 3
B
198 206anti-parallel
Strand 4
B
190 194anti-parallel
Strand 5
B
229 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il