Analysis of interatomic Contacts of Structural Units in PDB entry:
3EFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3EFX entry

There are 10 chains in PDB entry 3EFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 1	ALA 102
E	ALA 1	ALA 102
F	ALA 1	ALA 102
G	ALA 1	ALA 102
H	ALA 1	ALA 102
I	ALA 1	ALA 102
J	ALA 1	ALA 102
K	ALA 1	ALA 102
L	ALA 1	ALA 102
M	ALA 1	ALA 102

There are 21 helices in PDB entry 3EFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	D	4	11	Right-handed alpha
Helix 2	2	D	61	79	Right-handed alpha
Helix 3	3	E	4	10	Right-handed alpha
Helix 4	4	E	60	79	Right-handed alpha
Helix 5	5	F	4	11	Right-handed alpha
Helix 6	6	F	59	79	Right-handed alpha
Helix 7	7	G	4	10	Right-handed alpha
Helix 8	8	G	61	79	Right-handed alpha
Helix 9	9	H	4	10	Right-handed alpha
Helix 10	10	H	60	79	Right-handed alpha
Helix 11	11	I	4	10	Right-handed alpha
Helix 12	12	I	61	79	Right-handed alpha
Helix 13	13	J	4	11	Right-handed alpha
Helix 14	14	J	61	79	Right-handed alpha
Helix 15	15	K	4	11	Right-handed alpha
Helix 16	16	K	62	78	Right-handed alpha
Helix 17	17	L	4	11	Right-handed alpha
Helix 18	18	L	59	78	Right-handed alpha
Helix 19	19	M	4	11	Right-handed alpha
Helix 20	20	M	58	60	Right-handed 310
Helix 21	21	M	61	79	Right-handed alpha

There are 8 sheets in PDB entry 3EFX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	22	first strand
Strand 2	D	82	88	anti-parallel
Strand 3	D	94	101	anti-parallel
Strand 4	E	26	30	anti-parallel
Strand 5	E	38	41	anti-parallel
Strand 6	E	47	50	anti-parallel
Strand 7	E	94	101	parallel
Strand 8	F	26	30	anti-parallel
Strand 9	F	38	41	anti-parallel
Strand 10	F	47	50	anti-parallel
Strand 11	F	94	101	parallel
Strand 12	G	26	30	anti-parallel
Strand 13	G	38	41	anti-parallel
Strand 14	G	47	50	anti-parallel
Strand 15	G	94	101	parallel
Strand 16	G	82	88	anti-parallel
Strand 17	G	15	22	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	22	first strand
Strand 2	E	82	88	anti-parallel
Strand 3	E	94	101	anti-parallel
Strand 4	F	26	30	anti-parallel
Strand 5	F	38	41	anti-parallel
Strand 6	F	47	50	anti-parallel
Strand 7	F	94	101	parallel
Strand 8	F	82	88	anti-parallel
Strand 9	F	15	22	anti-parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	22	first strand
Strand 2	D	82	88	anti-parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	47	50	parallel
Strand 5	D	38	41	anti-parallel
Strand 6	D	26	30	anti-parallel
Strand 7	H	94	101	anti-parallel
Strand 8	H	81	88	anti-parallel
Strand 9	H	15	23	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	22	first strand
Strand 2	G	82	88	anti-parallel
Strand 3	G	94	101	anti-parallel
Strand 4	H	26	30	anti-parallel
Strand 5	H	38	41	anti-parallel
Strand 6	H	47	50	anti-parallel
Strand 7	H	94	101	parallel
Strand 8	H	81	88	anti-parallel
Strand 9	H	15	23	anti-parallel

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There are 17 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	23	first strand
Strand 2	I	81	88	anti-parallel
Strand 3	I	94	101	anti-parallel
Strand 4	J	26	30	anti-parallel
Strand 5	J	38	41	anti-parallel
Strand 6	J	47	50	anti-parallel
Strand 7	J	94	101	parallel
Strand 8	K	26	30	anti-parallel
Strand 9	K	38	41	anti-parallel
Strand 10	K	47	50	anti-parallel
Strand 11	K	94	101	parallel
Strand 12	L	26	30	anti-parallel
Strand 13	L	38	41	anti-parallel
Strand 14	L	47	50	anti-parallel
Strand 15	L	94	101	parallel
Strand 16	L	82	88	anti-parallel
Strand 17	L	15	22	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	15	23	first strand
Strand 2	J	81	88	anti-parallel
Strand 3	J	94	101	anti-parallel
Strand 4	K	26	30	anti-parallel
Strand 5	K	38	41	anti-parallel
Strand 6	K	47	50	anti-parallel
Strand 7	K	94	101	parallel
Strand 8	K	81	88	anti-parallel
Strand 9	K	15	23	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	23	first strand
Strand 2	I	81	88	anti-parallel
Strand 3	I	94	101	anti-parallel
Strand 4	I	47	50	parallel
Strand 5	I	38	41	anti-parallel
Strand 6	I	26	30	anti-parallel
Strand 7	M	94	101	anti-parallel
Strand 8	M	82	88	anti-parallel
Strand 9	M	15	22	anti-parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	15	22	first strand
Strand 2	L	82	88	anti-parallel
Strand 3	L	94	101	anti-parallel
Strand 4	M	26	30	anti-parallel
Strand 5	M	38	41	anti-parallel
Strand 6	M	47	50	anti-parallel
Strand 7	M	94	101	parallel
Strand 8	M	82	88	anti-parallel
Strand 9	M	15	22	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3EFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
3EFX