Analysis of interatomic Contacts of Structural Units in PDB entry:
3EGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EGE entry

There is 1 chain in PDB entry 3EGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12LEU 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3EGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
45 53Right-handed alpha
Helix 3
3
A
64 70Right-handed alpha
Helix 4
4
A
102 106Right-handed 310
Helix 5
5
A
108 120Right-handed alpha
Helix 6
6
A
132 135Right-handed 310
Helix 7
7
A
138 143Right-handed 310
Helix 8
8
A
144 153Right-handed alpha
Helix 9
9
A
156 169Right-handed alpha
Helix 10
10
A
194 199Right-handed 310
Helix 11
11
A
200 206Right-handed alpha
Helix 12
12
A
207 213Right-handed alpha
Helix 13
13
A
214 231Right-handed alpha
Helix 14
14
A
232 239Right-handed alpha
Helix 15
15
A
240 244Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 3EGE. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
57 61parallel
Strand 3
A
36 40parallel
Strand 4
A
96 100parallel
Strand 5
A
125 130parallel
Strand 6
A
251 257anti-parallel
Strand 7
A
171 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
246 247anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il