Analysis of interatomic Contacts of Structural Units in PDB entry:
3EGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EGI entry

There are 4 chains in PDB entry 3EGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 649ARG 848
B
 PRO 649ARG 847
C
 PRO 649ARG 847
D
 PRO 649ARG 847
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 3EGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
674 688Right-handed alpha
Helix 2
2
A
702 711Right-handed alpha
Helix 3
3
A
721 735Right-handed alpha
Helix 4
4
A
737 739Right-handed 310
Helix 5
5
A
747 752Right-handed alpha
Helix 6
6
A
753 755Right-handed 310
Helix 7
7
A
786 796Right-handed alpha
Helix 8
8
A
810 817Right-handed alpha
Helix 9
9
A
843 846Right-handed 310
Helix 10
10
B
674 688Right-handed alpha
Helix 11
11
B
702 711Right-handed alpha
Helix 12
12
B
721 735Right-handed alpha
Helix 13
13
B
737 739Right-handed 310
Helix 14
14
B
747 752Right-handed alpha
Helix 15
15
B
753 755Right-handed 310
Helix 16
16
B
778 783Right-handed alpha
Helix 17
17
B
786 796Right-handed alpha
Helix 18
18
B
810 817Right-handed alpha
Helix 19
19
B
843 846Right-handed 310
Helix 20
20
C
674 687Right-handed alpha
Helix 21
21
C
702 711Right-handed alpha
Helix 22
22
C
721 735Right-handed alpha
Helix 23
23
C
737 739Right-handed 310
Helix 24
24
C
747 752Right-handed alpha
Helix 25
25
C
753 755Right-handed 310
Helix 26
26
C
786 798Right-handed alpha
Helix 27
27
C
810 817Right-handed alpha
Helix 28
28
C
843 846Right-handed 310
Helix 29
29
D
674 688Right-handed alpha
Helix 30
30
D
702 711Right-handed alpha
Helix 31
31
D
721 735Right-handed alpha
Helix 32
32
D
737 739Right-handed 310
Helix 33
33
D
747 752Right-handed alpha
Helix 34
34
D
753 755Right-handed 310
Helix 35
35
D
786 798Right-handed alpha
Helix 36
36
D
810 817Right-handed alpha
Helix 37
37
D
843 846Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 3EGI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 659first strand
Strand 2
A
824 831parallel
Strand 3
A
834 841anti-parallel
Strand 4
A
801 806anti-parallel
Strand 5
A
759 762parallel
Strand 6
A
693 696parallel
Strand 7
A
714 719parallel
Strand 8
A
741 745parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 664first strand
Strand 2
A
670 671anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
653 659first strand
Strand 2
B
824 831parallel
Strand 3
B
834 841anti-parallel
Strand 4
B
801 806anti-parallel
Strand 5
B
759 762parallel
Strand 6
B
693 696parallel
Strand 7
B
714 719parallel
Strand 8
B
741 745parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
663 664first strand
Strand 2
B
670 671anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
651 660first strand
Strand 2
C
822 831parallel
Strand 3
C
834 841anti-parallel
Strand 4
C
801 806anti-parallel
Strand 5
C
759 762parallel
Strand 6
C
693 696parallel
Strand 7
C
714 719parallel
Strand 8
C
741 745parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
652 659first strand
Strand 2
D
823 831parallel
Strand 3
D
834 841anti-parallel
Strand 4
D
801 806anti-parallel
Strand 5
D
759 762parallel
Strand 6
D
693 696parallel
Strand 7
D
714 719parallel
Strand 8
D
741 745parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il