Analysis of interatomic Contacts of Structural Units in PDB entry:
3EGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EGJ entry

There are 2 chains in PDB entry 3EGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1GLN 377
B
 ASN -1GLN 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3EGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 37Right-handed 310
Helix 2
2
A
73 86Right-handed alpha
Helix 3
3
A
100 118Right-handed alpha
Helix 4
4
A
133 137Right-handed 310
Helix 5
5
A
149 159Right-handed alpha
Helix 6
6
A
169 173Right-handed 310
Helix 7
7
A
174 184Right-handed alpha
Helix 8
8
A
196 207Right-handed alpha
Helix 9
9
A
226 234Right-handed alpha
Helix 10
10
A
250 262Right-handed alpha
Helix 11
11
A
309 320Right-handed alpha
Helix 12
12
A
324 331Right-handed alpha
Helix 13
13
A
333 341Right-handed alpha
Helix 14
14
B
35 37Right-handed 310
Helix 15
15
B
73 85Right-handed alpha
Helix 16
16
B
100 118Right-handed alpha
Helix 17
17
B
149 159Right-handed alpha
Helix 18
18
B
169 173Right-handed 310
Helix 19
19
B
174 185Right-handed alpha
Helix 20
20
B
196 207Right-handed alpha
Helix 21
21
B
226 235Right-handed alpha
Helix 22
22
B
250 262Right-handed alpha
Helix 23
23
B
309 322Right-handed alpha
Helix 24
24
B
324 333Right-handed alpha
Helix 25
25
B
333 340Right-handed alpha
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There are 9 sheets in PDB entry 3EGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
2 5anti-parallel
Strand 4
A
43 45parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
8 10anti-parallel
Strand 3
A
50 53parallel
Strand 4
A
357 360anti-parallel
Strand 5
A
366 371anti-parallel
Strand 6
A
374 376anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
89 97parallel
Strand 3
A
125 128parallel
Strand 4
A
163 168parallel
Strand 5
A
187 190parallel
Strand 6
A
210 211parallel
Strand 7
A
239 242parallel
Strand 8
A
265 267parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
287 292anti-parallel
Strand 3
A
295 298anti-parallel
Strand 4
A
302 303anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
2 10anti-parallel
Strand 3
B
19 24anti-parallel
Strand 4
B
27 33anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
2 10anti-parallel
Strand 3
B
43 53parallel
Strand 4
B
357 360anti-parallel
Strand 5
B
366 371anti-parallel
Strand 6
B
374 375anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
89 97parallel
Strand 3
B
125 128parallel
Strand 4
B
163 168parallel
Strand 5
B
187 190parallel
Strand 6
B
210 211parallel
Strand 7
B
239 243parallel
Strand 8
B
265 268parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
66 67anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
288 291anti-parallel
Strand 3
B
296 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il