Analysis of interatomic Contacts of Structural Units in PDB entry:
3EIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EIF entry

There is 1 chain in PDB entry 3EIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 97SER 1032
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3EIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
101 106Right-handed alpha
Helix 2
2
A
110 119Right-handed alpha
Helix 3
3
A
144 148Right-handed 310
Helix 4
4
A
152 163Right-handed alpha
Helix 5
5
A
191 203Right-handed alpha
Helix 6
6
A
234 252Right-handed alpha
Helix 7
7
A
267 271Right-handed 310
Helix 8
8
A
272 285Right-handed alpha
Helix 9
9
A
377 382Right-handed 310
Helix 10
10
A
397 408Right-handed alpha
Helix 11
11
A
439 448Right-handed alpha
Helix 12
12
A
510 533Right-handed alpha
Helix 13
13
A
537 553Right-handed alpha
Helix 14
14
A
566 571Right-handed alpha
Helix 15
15
A
576 583Right-handed alpha
Helix 16
16
A
672 680Right-handed alpha
Helix 17
17
A
712 716Right-handed 310
Helix 18
18
A
722 726Right-handed 310
Helix 19
19
A
767 776Right-handed alpha
Helix 20
20
A
884 887Right-handed 310
Helix 21
21
A
1004 1006Right-handed 310
Helix 22
22
A
1024 1030Right-handed alpha
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There are 15 sheets in PDB entry 3EIF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 180first strand
Strand 2
A
223 228parallel
Strand 3
A
125 130parallel
Strand 4
A
256 259parallel
Strand 5
A
288 292parallel
Strand 6
A
326 332parallel
Strand 7
A
470 471anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 180first strand
Strand 2
A
223 228parallel
Strand 3
A
125 130parallel
Strand 4
A
256 259parallel
Strand 5
A
288 292parallel
Strand 6
A
326 332parallel
Strand 7
A
489 492parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 464first strand
Strand 2
A
335 345anti-parallel
Strand 3
A
453 456anti-parallel
Strand 4
A
366 371anti-parallel
Strand 5
A
388 392parallel
Strand 6
A
412 416parallel
Strand 7
A
435 438parallel
Strand 8
A
349 358anti-parallel
Strand 9
A
335 345anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 500first strand
Strand 2
A
504 508anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
563 564anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 589first strand
Strand 2
A
605 614anti-parallel
Strand 3
A
659 668anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 602first strand
Strand 2
A
702 710parallel
Strand 3
A
684 693anti-parallel
Strand 4
A
620 634anti-parallel
Strand 5
A
637 647anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 602first strand
Strand 2
A
702 710parallel
Strand 3
A
684 693anti-parallel
Strand 4
A
620 634anti-parallel
Strand 5
A
651 655anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 794first strand
Strand 2
A
760 765anti-parallel
Strand 3
A
833 836anti-parallel
Strand 4
A
881 882anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 799first strand
Strand 2
A
807 809anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 821first strand
Strand 2
A
919 927parallel
Strand 3
A
901 911anti-parallel
Strand 4
A
842 850anti-parallel
Strand 5
A
856 859anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 821first strand
Strand 2
A
919 927parallel
Strand 3
A
901 911anti-parallel
Strand 4
A
842 850anti-parallel
Strand 5
A
863 866anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
938 941first strand
Strand 2
A
946 949anti-parallel
Strand 3
A
987 988anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 979first strand
Strand 2
A
959 969anti-parallel
Strand 3
A
1008 1014anti-parallel
Strand 4
A
1019 1023anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 994first strand
Strand 2
A
1000 1002anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il