Analysis of interatomic Contacts of Structural Units in PDB entry:
3EII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EII entry

There are 4 chains in PDB entry 3EII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1CYS 208
B
 HIS 1CYS 208
C
 HIS 1CYS 208
D
 HIS 1CYS 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3EII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 39Right-handed alpha
Helix 2
2
B
34 39Right-handed alpha
Helix 3
3
C
34 39Right-handed alpha
Helix 4
4
D
34 39Right-handed alpha
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There are 10 sheets in PDB entry 3EII. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
118 122anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
151 162anti-parallel
Strand 3
A
50 53parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
151 162anti-parallel
Strand 3
A
130 140anti-parallel
Strand 4
A
72 78anti-parallel
Strand 5
A
95 100anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
57 63anti-parallel
Strand 3
B
118 122anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
151 162parallel
Strand 3
B
130 140anti-parallel
Strand 4
B
72 78anti-parallel
Strand 5
B
95 100anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
57 63anti-parallel
Strand 3
C
118 122anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
151 162anti-parallel
Strand 3
C
50 53parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
151 162anti-parallel
Strand 3
C
130 140anti-parallel
Strand 4
C
72 78anti-parallel
Strand 5
C
95 100anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
57 63anti-parallel
Strand 3
D
118 122anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
151 162parallel
Strand 3
D
130 140anti-parallel
Strand 4
D
72 78anti-parallel
Strand 5
D
95 100anti-parallel
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