Analysis of interatomic Contacts of Structural Units in PDB entry:
3EJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EJD entry

There are 8 chains in PDB entry 3EJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18HIS 95
B
 SER 9GLU 394
C
 GLY 17ASN 93
D
 THR 6GLU 394
E
 SER 18HIS 95
F
 SER 9GLU 394
G
 GLY 17ASN 93
H
 ALA 7PHE 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 3EJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 36Right-handed alpha
Helix 2
2
A
57 70Right-handed alpha
Helix 3
3
A
75 82Right-handed alpha
Helix 4
4
A
84 95Right-handed alpha
Helix 5
5
B
9 14Right-handed alpha
Helix 6
6
B
14 26Right-handed alpha
Helix 7
7
B
43 53Right-handed alpha
Helix 8
8
B
69 78Right-handed alpha
Helix 9
9
B
79 83Right-handed 310
Helix 10
10
B
86 96Right-handed alpha
Helix 11
11
B
97 99Right-handed 310
Helix 12
12
B
100 106Right-handed alpha
Helix 13
13
B
107 121Right-handed alpha
Helix 14
14
B
122 125Right-handed 310
Helix 15
15
B
130 134Right-handed alpha
Helix 16
16
B
134 148Right-handed alpha
Helix 17
17
B
150 152Right-handed 310
Helix 18
18
B
153 166Right-handed alpha
Helix 19
19
B
167 169Right-handed 310
Helix 20
20
B
173 201Right-handed alpha
Helix 21
21
B
205 213Right-handed alpha
Helix 22
22
B
220 253Right-handed alpha
Helix 23
23
B
253 263Right-handed alpha
Helix 24
24
B
266 278Right-handed alpha
Helix 25
25
B
309 313Right-handed alpha
Helix 26
26
B
346 365Right-handed alpha
Helix 27
27
C
22 36Right-handed alpha
Helix 28
28
C
57 70Right-handed alpha
Helix 29
29
C
75 82Right-handed alpha
Helix 30
30
C
84 93Right-handed alpha
Helix 31
31
D
6 14Right-handed alpha
Helix 32
32
D
14 26Right-handed alpha
Helix 33
33
D
43 53Right-handed alpha
Helix 34
34
D
69 78Right-handed alpha
Helix 35
35
D
79 83Right-handed 310
Helix 36
36
D
86 96Right-handed alpha
Helix 37
37
D
97 99Right-handed 310
Helix 38
38
D
100 106Right-handed alpha
Helix 39
39
D
107 121Right-handed alpha
Helix 40
40
D
122 125Right-handed 310
Helix 41
41
D
130 134Right-handed alpha
Helix 42
42
D
134 148Right-handed alpha
Helix 43
43
D
150 152Right-handed 310
Helix 44
44
D
153 167Right-handed alpha
Helix 45
45
D
173 201Right-handed alpha
Helix 46
46
D
205 213Right-handed alpha
Helix 47
47
D
220 252Right-handed alpha
Helix 48
48
D
253 263Right-handed alpha
Helix 49
49
D
266 278Right-handed alpha
Helix 50
50
D
309 313Right-handed alpha
Helix 51
51
D
339 343Right-handed 310
Helix 52
52
D
346 365Right-handed alpha
Helix 53
53
E
22 36Right-handed alpha
Helix 54
54
E
57 70Right-handed alpha
Helix 55
55
E
75 82Right-handed alpha
Helix 56
56
E
84 95Right-handed alpha
Helix 57
57
F
9 14Right-handed alpha
Helix 58
58
F
14 26Right-handed alpha
Helix 59
59
F
43 53Right-handed alpha
Helix 60
60
F
69 78Right-handed alpha
Helix 61
61
F
79 83Right-handed 310
Helix 62
62
F
86 96Right-handed alpha
Helix 63
63
F
97 99Right-handed 310
Helix 64
64
F
100 106Right-handed alpha
Helix 65
65
F
107 121Right-handed alpha
Helix 66
66
F
122 125Right-handed 310
Helix 67
67
F
130 134Right-handed alpha
Helix 68
68
F
134 148Right-handed alpha
Helix 69
69
F
150 152Right-handed 310
Helix 70
70
F
153 166Right-handed alpha
Helix 71
71
F
167 169Right-handed 310
Helix 72
72
F
173 201Right-handed alpha
Helix 73
73
F
205 213Right-handed alpha
Helix 74
74
F
220 253Right-handed alpha
Helix 75
75
F
253 263Right-handed alpha
Helix 76
76
F
266 278Right-handed alpha
Helix 77
77
F
309 313Right-handed alpha
Helix 78
78
F
346 365Right-handed alpha
Helix 79
79
G
22 36Right-handed alpha
Helix 80
80
G
57 70Right-handed alpha
Helix 81
81
G
75 82Right-handed alpha
Helix 82
82
G
84 93Right-handed alpha
Helix 83
83
H
9 14Right-handed alpha
Helix 84
84
H
14 26Right-handed alpha
Helix 85
85
H
43 53Right-handed alpha
Helix 86
86
H
69 78Right-handed alpha
Helix 87
87
H
79 83Right-handed 310
Helix 88
88
H
86 96Right-handed alpha
Helix 89
89
H
97 99Right-handed 310
Helix 90
90
H
100 106Right-handed alpha
Helix 91
91
H
107 121Right-handed alpha
Helix 92
92
H
130 134Right-handed alpha
Helix 93
93
H
134 148Right-handed alpha
Helix 94
94
H
150 152Right-handed 310
Helix 95
95
H
153 167Right-handed alpha
Helix 96
96
H
173 201Right-handed alpha
Helix 97
97
H
205 213Right-handed alpha
Helix 98
98
H
220 252Right-handed alpha
Helix 99
99
H
253 263Right-handed alpha
Helix 100
100
H
266 278Right-handed alpha
Helix 101
101
H
309 313Right-handed alpha
Helix 102
102
H
339 343Right-handed 310
Helix 103
103
H
346 365Right-handed alpha
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There are 12 sheets in PDB entry 3EJD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 33first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
304 308parallel
Strand 4
B
283 288anti-parallel
Strand 5
B
56 57anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
390 392anti-parallel
Strand 3
B
369 370anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 294first strand
Strand 2
B
297 299anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 33first strand
Strand 2
D
36 41anti-parallel
Strand 3
D
304 308parallel
Strand 4
D
283 288anti-parallel
Strand 5
D
56 57anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 129first strand
Strand 2
D
390 392anti-parallel
Strand 3
D
369 370anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
292 294first strand
Strand 2
D
297 299anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
28 33first strand
Strand 2
F
36 41anti-parallel
Strand 3
F
304 308parallel
Strand 4
F
283 288anti-parallel
Strand 5
F
56 57anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
127 129first strand
Strand 2
F
390 392anti-parallel
Strand 3
F
369 370anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
292 294first strand
Strand 2
F
297 299anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
28 33first strand
Strand 2
H
36 41anti-parallel
Strand 3
H
304 308parallel
Strand 4
H
283 288anti-parallel
Strand 5
H
56 57anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
127 129first strand
Strand 2
H
390 392anti-parallel
Strand 3
H
369 370anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
292 294first strand
Strand 2
H
297 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il