Analysis of interatomic Contacts of Structural Units in PDB entry:
3EJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3EJE entry

There are 8 chains in PDB entry 3EJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 18	HIS 95
B	SER 9	GLU 394
C	SER 18	HIS 95
D	THR 6	GLU 394
E	SER 18	ASN 93
F	SER 9	GLU 394
G	SER 18	ILE 92
H	THR 6	GLU 394

There are105 helices in PDB entry 3EJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	36	Right-handed alpha
Helix 2	2	A	57	70	Right-handed alpha
Helix 3	3	A	75	82	Right-handed alpha
Helix 4	4	A	84	94	Right-handed alpha
Helix 5	5	B	9	14	Right-handed alpha
Helix 6	6	B	14	26	Right-handed alpha
Helix 7	7	B	43	53	Right-handed alpha
Helix 8	8	B	69	78	Right-handed alpha
Helix 9	9	B	79	83	Right-handed 310
Helix 10	10	B	86	96	Right-handed alpha
Helix 11	11	B	97	99	Right-handed 310
Helix 12	12	B	100	106	Right-handed alpha
Helix 13	13	B	107	121	Right-handed alpha
Helix 14	14	B	130	134	Right-handed alpha
Helix 15	15	B	134	148	Right-handed alpha
Helix 16	16	B	150	152	Right-handed 310
Helix 17	17	B	153	165	Right-handed alpha
Helix 18	18	B	166	169	Right-handed 310
Helix 19	19	B	173	201	Right-handed alpha
Helix 20	20	B	205	212	Right-handed alpha
Helix 21	21	B	220	253	Right-handed alpha
Helix 22	22	B	254	256	Right-handed 310
Helix 23	23	B	257	263	Right-handed alpha
Helix 24	24	B	266	278	Right-handed alpha
Helix 25	25	B	309	313	Right-handed alpha
Helix 26	26	B	339	343	Right-handed 310
Helix 27	27	B	346	365	Right-handed alpha
Helix 28	28	C	22	36	Right-handed alpha
Helix 29	29	C	57	70	Right-handed alpha
Helix 30	30	C	75	82	Right-handed alpha
Helix 31	31	C	84	95	Right-handed alpha
Helix 32	32	D	6	14	Right-handed alpha
Helix 33	33	D	14	26	Right-handed alpha
Helix 34	34	D	43	53	Right-handed alpha
Helix 35	35	D	69	78	Right-handed alpha
Helix 36	36	D	79	83	Right-handed 310
Helix 37	37	D	86	96	Right-handed alpha
Helix 38	38	D	97	99	Right-handed 310
Helix 39	39	D	100	106	Right-handed alpha
Helix 40	40	D	107	121	Right-handed alpha
Helix 41	41	D	130	134	Right-handed alpha
Helix 42	42	D	134	148	Right-handed alpha
Helix 43	43	D	150	152	Right-handed 310
Helix 44	44	D	153	165	Right-handed alpha
Helix 45	45	D	166	169	Right-handed 310
Helix 46	46	D	173	201	Right-handed alpha
Helix 47	47	D	205	213	Right-handed alpha
Helix 48	48	D	220	253	Right-handed alpha
Helix 49	49	D	253	263	Right-handed alpha
Helix 50	50	D	266	278	Right-handed alpha
Helix 51	51	D	309	313	Right-handed alpha
Helix 52	52	D	339	343	Right-handed 310
Helix 53	53	D	346	365	Right-handed alpha
Helix 54	54	E	22	36	Right-handed alpha
Helix 55	55	E	57	70	Right-handed alpha
Helix 56	56	E	75	80	Right-handed alpha
Helix 57	57	E	84	93	Right-handed alpha
Helix 58	58	F	9	14	Right-handed alpha
Helix 59	59	F	14	26	Right-handed alpha
Helix 60	60	F	43	53	Right-handed alpha
Helix 61	61	F	69	78	Right-handed alpha
Helix 62	62	F	79	83	Right-handed 310
Helix 63	63	F	86	96	Right-handed alpha
Helix 64	64	F	97	99	Right-handed 310
Helix 65	65	F	100	106	Right-handed alpha
Helix 66	66	F	107	121	Right-handed alpha
Helix 67	67	F	130	134	Right-handed alpha
Helix 68	68	F	134	148	Right-handed alpha
Helix 69	69	F	150	152	Right-handed 310
Helix 70	70	F	153	165	Right-handed alpha
Helix 71	71	F	166	169	Right-handed 310
Helix 72	72	F	173	201	Right-handed alpha
Helix 73	73	F	205	212	Right-handed alpha
Helix 74	74	F	220	253	Right-handed alpha
Helix 75	75	F	253	263	Right-handed alpha
Helix 76	76	F	266	278	Right-handed alpha
Helix 77	77	F	309	313	Right-handed alpha
Helix 78	78	F	339	343	Right-handed 310
Helix 79	79	F	346	365	Right-handed alpha
Helix 80	80	G	22	36	Right-handed alpha
Helix 81	81	G	57	70	Right-handed alpha
Helix 82	82	G	75	82	Right-handed alpha
Helix 83	83	G	84	92	Right-handed alpha
Helix 84	84	H	6	14	Right-handed alpha
Helix 85	85	H	14	26	Right-handed alpha
Helix 86	86	H	43	53	Right-handed alpha
Helix 87	87	H	69	78	Right-handed alpha
Helix 88	88	H	79	83	Right-handed 310
Helix 89	89	H	86	96	Right-handed alpha
Helix 90	90	H	97	99	Right-handed 310
Helix 91	91	H	100	106	Right-handed alpha
Helix 92	92	H	107	121	Right-handed alpha
Helix 93	93	H	130	134	Right-handed alpha
Helix 94	94	H	134	148	Right-handed alpha
Helix 95	95	H	150	152	Right-handed 310
Helix 96	96	H	153	165	Right-handed alpha
Helix 97	97	H	166	169	Right-handed 310
Helix 98	98	H	173	201	Right-handed alpha
Helix 99	99	H	205	212	Right-handed alpha
Helix 100	100	H	220	253	Right-handed alpha
Helix 101	101	H	253	263	Right-handed alpha
Helix 102	102	H	266	278	Right-handed alpha
Helix 103	103	H	309	313	Right-handed alpha
Helix 104	104	H	339	343	Right-handed 310
Helix 105	105	H	346	365	Right-handed alpha

There are 12 sheets in PDB entry 3EJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	33	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	304	308	parallel
Strand 4	B	283	288	anti-parallel
Strand 5	B	56	57	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	129	first strand
Strand 2	B	390	392	anti-parallel
Strand 3	B	369	370	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	294	first strand
Strand 2	B	297	299	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	33	first strand
Strand 2	D	36	41	anti-parallel
Strand 3	D	304	308	parallel
Strand 4	D	283	288	anti-parallel
Strand 5	D	56	57	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	129	first strand
Strand 2	D	390	392	anti-parallel
Strand 3	D	369	370	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	294	first strand
Strand 2	D	297	299	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	33	first strand
Strand 2	F	36	41	anti-parallel
Strand 3	F	304	308	parallel
Strand 4	F	283	288	anti-parallel
Strand 5	F	56	57	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	129	first strand
Strand 2	F	390	392	anti-parallel
Strand 3	F	369	370	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	292	294	first strand
Strand 2	F	297	299	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	33	first strand
Strand 2	H	36	41	anti-parallel
Strand 3	H	304	308	parallel
Strand 4	H	283	288	anti-parallel
Strand 5	H	56	57	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	129	first strand
Strand 2	H	390	392	anti-parallel
Strand 3	H	369	370	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	292	294	first strand
Strand 2	H	297	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3EJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
3EJE