Analysis of interatomic Contacts of Structural Units in PDB entry:
3EJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EJO entry

There are 2 chains in PDB entry 3EJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 301
B
 MET 1VAL 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3EJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 28Right-handed alpha
Helix 2
2
A
138 154Right-handed alpha
Helix 3
3
A
155 157Right-handed 310
Helix 4
4
A
159 172Right-handed alpha
Helix 5
5
A
175 178Right-handed 310
Helix 6
6
A
195 222Right-handed alpha
Helix 7
7
A
227 248Right-handed alpha
Helix 8
8
A
249 258Right-handed alpha
Helix 9
9
A
261 266Right-handed alpha
Helix 10
10
A
267 269Right-handed 310
Helix 11
11
A
287 293Right-handed alpha
Helix 12
12
A
293 298Right-handed alpha
Helix 13
13
B
1 28Right-handed alpha
Helix 14
14
B
138 154Right-handed alpha
Helix 15
15
B
155 157Right-handed 310
Helix 16
16
B
159 172Right-handed alpha
Helix 17
17
B
175 178Right-handed 310
Helix 18
18
B
195 222Right-handed alpha
Helix 19
19
B
227 248Right-handed alpha
Helix 20
20
B
249 258Right-handed alpha
Helix 21
21
B
261 266Right-handed alpha
Helix 22
22
B
267 269Right-handed 310
Helix 23
23
B
285 293Right-handed alpha
Helix 24
24
B
293 298Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3EJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
44 51anti-parallel
Strand 3
A
56 66anti-parallel
Strand 4
A
86 98anti-parallel
Strand 5
A
105 116anti-parallel
Strand 6
A
123 133anti-parallel
Strand 7
A
184 191anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
179 180anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
B
272 274anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
43 51anti-parallel
Strand 3
B
56 68anti-parallel
Strand 4
B
86 98anti-parallel
Strand 5
B
105 116anti-parallel
Strand 6
B
123 133anti-parallel
Strand 7
B
184 191anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
179 180anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il