Analysis of interatomic Contacts of Structural Units in PDB entry:
3EK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EK6 entry

There are 6 chains in PDB entry 3EK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2SER 240
B
 MET 1SER 240
C
 GLU 3SER 240
D
 MET 1SER 240
E
 GLU 3SER 240
F
 GLU 3SER 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3EK6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 4Right-handed 310
Helix 2
2
A
14 19Right-handed 310
Helix 3
3
A
27 44Right-handed alpha
Helix 4
4
A
69 95Right-handed alpha
Helix 5
5
A
115 125Right-handed alpha
Helix 6
6
A
141 154Right-handed alpha
Helix 7
7
A
171 175Right-handed 310
Helix 8
8
A
185 193Right-handed alpha
Helix 9
9
A
198 208Right-handed alpha
Helix 10
10
A
221 228Right-handed alpha
Helix 11
11
B
15 19Right-handed 310
Helix 12
12
B
27 44Right-handed alpha
Helix 13
13
B
69 94Right-handed alpha
Helix 14
14
B
115 125Right-handed alpha
Helix 15
15
B
141 154Right-handed alpha
Helix 16
16
B
185 192Right-handed alpha
Helix 17
17
B
198 208Right-handed alpha
Helix 18
18
B
221 228Right-handed alpha
Helix 19
19
C
14 19Right-handed 310
Helix 20
20
C
27 44Right-handed alpha
Helix 21
21
C
69 95Right-handed alpha
Helix 22
22
C
115 125Right-handed alpha
Helix 23
23
C
141 153Right-handed alpha
Helix 24
24
C
185 192Right-handed alpha
Helix 25
25
C
198 208Right-handed alpha
Helix 26
26
C
221 228Right-handed alpha
Helix 27
27
D
15 19Right-handed 310
Helix 28
28
D
27 44Right-handed alpha
Helix 29
29
D
69 94Right-handed alpha
Helix 30
30
D
115 125Right-handed alpha
Helix 31
31
D
141 153Right-handed alpha
Helix 32
32
D
185 192Right-handed alpha
Helix 33
33
D
198 208Right-handed alpha
Helix 34
34
D
221 228Right-handed alpha
Helix 35
35
E
15 19Right-handed 310
Helix 36
36
E
27 44Right-handed alpha
Helix 37
37
E
59 64Right-handed alpha
Helix 38
38
E
69 94Right-handed alpha
Helix 39
39
E
115 125Right-handed alpha
Helix 40
40
E
141 153Right-handed alpha
Helix 41
41
E
185 192Right-handed alpha
Helix 42
42
E
198 208Right-handed alpha
Helix 43
43
E
221 228Right-handed alpha
Helix 44
44
F
14 19Right-handed 310
Helix 45
45
F
27 44Right-handed alpha
Helix 46
46
F
59 64Right-handed alpha
Helix 47
47
F
69 94Right-handed alpha
Helix 48
48
F
115 124Right-handed alpha
Helix 49
49
F
141 153Right-handed alpha
Helix 50
50
F
185 193Right-handed alpha
Helix 51
51
F
198 208Right-handed alpha
Helix 52
52
F
221 229Right-handed alpha
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There are 7 sheets in PDB entry 3EK6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
99 103parallel
Strand 3
A
128 132parallel
Strand 4
A
47 52parallel
Strand 5
A
8 13parallel
Strand 6
A
157 161parallel
Strand 7
A
212 215parallel
Strand 8
A
234 236anti-parallel
Strand 9
A
183 184parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
99 103parallel
Strand 3
B
128 132parallel
Strand 4
B
47 52parallel
Strand 5
B
8 13parallel
Strand 6
B
157 161parallel
Strand 7
B
212 215parallel
Strand 8
B
234 236anti-parallel
Strand 9
B
183 184parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 113first strand
Strand 2
C
99 103parallel
Strand 3
C
128 132parallel
Strand 4
C
47 52parallel
Strand 5
C
8 13parallel
Strand 6
C
157 161parallel
Strand 7
C
212 215parallel
Strand 8
C
234 236anti-parallel
Strand 9
C
183 184parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 168first strand
Strand 2
C
180 181anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 113first strand
Strand 2
D
99 103parallel
Strand 3
D
128 132parallel
Strand 4
D
47 52parallel
Strand 5
D
8 13parallel
Strand 6
D
157 161parallel
Strand 7
D
212 215parallel
Strand 8
D
234 236anti-parallel
Strand 9
D
183 184parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
112 113first strand
Strand 2
E
99 103parallel
Strand 3
E
128 132parallel
Strand 4
E
47 52parallel
Strand 5
E
8 13parallel
Strand 6
E
157 161parallel
Strand 7
E
212 215parallel
Strand 8
E
234 236anti-parallel
Strand 9
E
183 184parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
112 113first strand
Strand 2
F
99 103parallel
Strand 3
F
128 132parallel
Strand 4
F
47 52parallel
Strand 5
F
8 13parallel
Strand 6
F
157 161parallel
Strand 7
F
212 215parallel
Strand 8
F
234 236anti-parallel
Strand 9
F
183 184parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il