Analysis of interatomic Contacts of Structural Units in PDB entry:
3EMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EMR entry

There is 1 chain in PDB entry 3EMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1TYR 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3EMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 33Right-handed 310
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
56 74Right-handed alpha
Helix 4
4
A
96 101Right-handed alpha
Helix 5
5
A
101 109Right-handed alpha
Helix 6
6
A
110 122Right-handed alpha
Helix 7
7
A
147 157Right-handed alpha
Helix 8
8
A
185 187Right-handed 310
Helix 9
9
A
215 227Right-handed alpha
Helix 10
10
A
270 272Right-handed 310
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There are 3 sheets in PDB entry 3EMR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
189 192anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
239 243anti-parallel
Strand 3
A
163 169anti-parallel
Strand 4
A
261 268anti-parallel
Strand 5
A
125 133anti-parallel
Strand 6
A
91 95anti-parallel
Strand 7
A
82 84anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
248 250anti-parallel
Strand 3
A
181 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il