Analysis of interatomic Contacts of Structural Units in PDB entry:
3EMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EMV entry

There is 1 chain in PDB entry 3EMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 3EMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 34Right-handed alpha
Helix 2
2
A
68 82Right-handed alpha
Helix 3
3
A
117 123Right-handed alpha
Helix 4
4
A
132 146Right-handed alpha
Helix 5
5
A
170 177Right-handed alpha
Helix 6
6
A
185 197Right-handed alpha
Helix 7
7
A
225 245Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3EMV. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 45first strand
Strand 2
A
48 55anti-parallel
Strand 3
A
58 64anti-parallel
Strand 4
A
19 23parallel
Strand 5
A
86 95parallel
Strand 6
A
181 183anti-parallel
Strand 7
A
151 158parallel
Strand 8
A
106 115parallel
Strand 9
A
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 45first strand
Strand 2
A
48 55anti-parallel
Strand 3
A
58 64anti-parallel
Strand 4
A
19 23parallel
Strand 5
A
86 95parallel
Strand 6
A
199 208parallel
Strand 7
A
106 115anti-parallel
Strand 8
A
129 130anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il