Analysis of interatomic Contacts of Structural Units in PDB entry:
3EOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EOJ entry

There is 1 chain in PDB entry 3EOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7GLN 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3EOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
126 131Right-handed alpha
Helix 2
2
A
155 172Right-handed alpha
Helix 3
3
A
172 185Right-handed alpha
Helix 4
4
A
188 196Right-handed alpha
Helix 5
5
A
233 238Right-handed alpha
Helix 6
6
A
244 248Right-handed 310
Helix 7
7
A
291 300Right-handed alpha
Helix 8
8
A
342 354Right-handed alpha
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There are 3 sheets in PDB entry 3EOJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
218 229anti-parallel
Strand 3
A
204 211anti-parallel
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There are 15 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
218 229anti-parallel
Strand 3
A
141 152anti-parallel
Strand 4
A
108 122anti-parallel
Strand 5
A
94 105anti-parallel
Strand 6
A
77 89anti-parallel
Strand 7
A
64 74anti-parallel
Strand 8
A
46 56anti-parallel
Strand 9
A
252 260anti-parallel
Strand 10
A
265 273anti-parallel
Strand 11
A
27 35anti-parallel
Strand 12
A
10 19anti-parallel
Strand 13
A
308 316parallel
Strand 14
A
337 341anti-parallel
Strand 15
A
332 334anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 281first strand
Strand 2
A
284 287anti-parallel
Strand 3
A
361 365anti-parallel
Strand 4
A
322 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il