Analysis of interatomic Contacts of Structural Units in PDB entry:
3EOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EOQ entry

There are 2 chains in PDB entry 3EOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 405
B
 MSE 1ALA 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3EOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 37Right-handed 310
Helix 2
2
A
38 42Right-handed 310
Helix 3
3
A
43 53Right-handed alpha
Helix 4
4
A
60 71Right-handed alpha
Helix 5
5
A
91 93Right-handed 310
Helix 6
6
A
94 106Right-handed alpha
Helix 7
7
A
111 132Right-handed alpha
Helix 8
8
A
132 147Right-handed alpha
Helix 9
9
A
149 153Right-handed 310
Helix 10
10
A
158 165Right-handed alpha
Helix 11
11
A
166 178Right-handed alpha
Helix 12
12
A
179 181Right-handed 310
Helix 13
13
A
192 205Right-handed alpha
Helix 14
14
A
251 264Right-handed alpha
Helix 15
15
A
268 274Right-handed alpha
Helix 16
16
A
306 325Right-handed alpha
Helix 17
17
A
327 346Right-handed alpha
Helix 18
18
A
348 364Right-handed alpha
Helix 19
19
A
368 379Right-handed alpha
Helix 20
20
A
380 390Right-handed alpha
Helix 21
21
B
33 37Right-handed 310
Helix 22
22
B
43 53Right-handed alpha
Helix 23
23
B
60 71Right-handed alpha
Helix 24
24
B
91 93Right-handed 310
Helix 25
25
B
94 106Right-handed alpha
Helix 26
26
B
111 130Right-handed alpha
Helix 27
27
B
132 147Right-handed alpha
Helix 28
28
B
149 153Right-handed 310
Helix 29
29
B
158 165Right-handed alpha
Helix 30
30
B
166 178Right-handed alpha
Helix 31
31
B
179 181Right-handed 310
Helix 32
32
B
192 204Right-handed alpha
Helix 33
33
B
251 264Right-handed alpha
Helix 34
34
B
268 274Right-handed alpha
Helix 35
35
B
306 325Right-handed alpha
Helix 36
36
B
327 347Right-handed alpha
Helix 37
37
B
348 364Right-handed alpha
Helix 38
38
B
368 378Right-handed alpha
Helix 39
39
B
380 389Right-handed alpha
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There are 4 sheets in PDB entry 3EOQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
12 17anti-parallel
Strand 3
A
183 189parallel
Strand 4
A
24 30anti-parallel
Strand 5
A
84 90anti-parallel
Strand 6
A
74 79anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 229first strand
Strand 2
A
397 402parallel
Strand 3
A
236 243anti-parallel
Strand 4
A
294 302anti-parallel
Strand 5
A
280 289anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
12 17anti-parallel
Strand 3
B
183 189parallel
Strand 4
B
24 30anti-parallel
Strand 5
B
84 90anti-parallel
Strand 6
B
74 79anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 229first strand
Strand 2
B
397 402parallel
Strand 3
B
236 243anti-parallel
Strand 4
B
294 302anti-parallel
Strand 5
B
280 289anti-parallel
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