Analysis of interatomic Contacts of Structural Units in PDB entry:
3EQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EQP entry

There are 2 chains in PDB entry 3EQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 117ASP 392
A
 LEU 117PRO 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3EQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
122 124Right-handed 310
Helix 2
2
B
167 184Right-handed alpha
Helix 3
3
B
212 218Right-handed alpha
Helix 4
4
B
220 224Right-handed 310
Helix 5
5
B
225 246Right-handed alpha
Helix 6
6
B
254 256Right-handed 310
Helix 7
7
B
287 291Right-handed 310
Helix 8
8
B
293 297Right-handed 310
Helix 9
9
B
298 305Right-handed alpha
Helix 10
10
B
309 325Right-handed alpha
Helix 11
11
B
335 345Right-handed alpha
Helix 12
12
B
357 368Right-handed alpha
Helix 13
13
B
371 375Right-handed 310
Helix 14
14
B
377 388Right-handed alpha
Helix 15
15
A
167 183Right-handed alpha
Helix 16
16
A
213 221Right-handed alpha
Helix 17
17
A
222 224Right-handed 310
Helix 18
18
A
225 246Right-handed alpha
Helix 19
19
A
254 256Right-handed 310
Helix 20
20
A
293 297Right-handed 310
Helix 21
21
A
298 305Right-handed alpha
Helix 22
22
A
308 325Right-handed alpha
Helix 23
23
A
335 345Right-handed alpha
Helix 24
24
A
357 368Right-handed alpha
Helix 25
25
A
371 375Right-handed 310
Helix 26
26
A
377 388Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3EQP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
192 196parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
152 159anti-parallel
Strand 5
B
138 146anti-parallel
Strand 6
B
126 135anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
B
275 276anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 262first strand
Strand 2
B
265 268anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
306 308anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
192 196parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
152 159anti-parallel
Strand 5
A
138 146anti-parallel
Strand 6
A
126 135anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
265 268anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
275 276anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
306 307anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il