Analysis of interatomic Contacts of Structural Units in PDB entry:
3ES5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ES5 entry

There are 2 chains in PDB entry 3ES5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 42ASP 420
B
 MET 42ALA 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3ES5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 95Right-handed alpha
Helix 2
2
A
96 99Right-handed 310
Helix 3
3
A
101 128Right-handed alpha
Helix 4
4
A
129 136Right-handed alpha
Helix 5
5
A
139 145Right-handed alpha
Helix 6
6
A
151 158Right-handed alpha
Helix 7
7
A
174 191Right-handed alpha
Helix 8
8
A
202 204Right-handed 310
Helix 9
9
A
210 229Right-handed alpha
Helix 10
10
A
254 261Right-handed alpha
Helix 11
11
A
268 279Right-handed alpha
Helix 12
12
A
282 288Right-handed alpha
Helix 13
13
A
296 304Right-handed alpha
Helix 14
14
A
310 313Right-handed 310
Helix 15
15
A
314 333Right-handed alpha
Helix 16
16
A
333 341Right-handed alpha
Helix 17
17
A
353 358Right-handed 310
Helix 18
18
A
372 383Right-handed alpha
Helix 19
19
A
401 412Right-handed alpha
Helix 20
20
A
413 414Right-handed 310
Helix 21
21
A
415 419Right-handed 310
Helix 22
22
B
78 94Right-handed alpha
Helix 23
23
B
102 127Right-handed alpha
Helix 24
24
B
129 136Right-handed alpha
Helix 25
25
B
139 145Right-handed alpha
Helix 26
26
B
151 158Right-handed alpha
Helix 27
27
B
174 192Right-handed alpha
Helix 28
28
B
193 195Right-handed 310
Helix 29
29
B
210 229Right-handed alpha
Helix 30
30
B
254 261Right-handed alpha
Helix 31
31
B
268 281Right-handed alpha
Helix 32
32
B
282 288Right-handed alpha
Helix 33
33
B
296 304Right-handed alpha
Helix 34
34
B
310 313Right-handed 310
Helix 35
35
B
314 333Right-handed alpha
Helix 36
36
B
333 341Right-handed alpha
Helix 37
37
B
353 358Right-handed 310
Helix 38
38
B
372 383Right-handed alpha
Helix 39
39
B
401 412Right-handed alpha
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There are 10 sheets in PDB entry 3ES5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
394 397anti-parallel
Strand 3
B
364 367anti-parallel
Strand 4
B
359 361anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
168 172anti-parallel
Strand 3
A
71 75parallel
Strand 4
A
385 390anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
343 344anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
307 308parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
244 245anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
364 367anti-parallel
Strand 3
B
394 397anti-parallel
Strand 4
B
64 65anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
168 172anti-parallel
Strand 3
B
71 75parallel
Strand 4
B
385 390anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
343 344anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
307 308parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
245 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il