Analysis of interatomic Contacts of Structural Units in PDB entry:
3EU8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3EU8 entry

There are 4 chains in PDB entry 3EU8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 30	LYS 451
B	LYS 30	LYS 451
C	LYS 30	LYS 451
D	LYS 30	LYS 451

There are 72 helices in PDB entry 3EU8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	38	56	Right-handed alpha
Helix 2	2	A	85	101	Right-handed alpha
Helix 3	3	A	105	123	Right-handed alpha
Helix 4	4	A	153	171	Right-handed alpha
Helix 5	5	A	174	191	Right-handed alpha
Helix 6	6	A	193	198	Right-handed 310
Helix 7	7	A	226	236	Right-handed alpha
Helix 8	8	A	242	249	Right-handed alpha
Helix 9	9	A	251	255	Right-handed 310
Helix 10	10	A	278	287	Right-handed 310
Helix 11	11	A	301	320	Right-handed alpha
Helix 12	12	A	349	353	Right-handed 310
Helix 13	13	A	358	364	Right-handed alpha
Helix 14	14	A	369	383	Right-handed alpha
Helix 15	15	A	384	386	Right-handed 310
Helix 16	16	A	410	426	Right-handed alpha
Helix 17	17	A	426	434	Right-handed alpha
Helix 18	18	A	435	446	Right-handed alpha
Helix 19	19	B	38	57	Right-handed alpha
Helix 20	20	B	85	101	Right-handed alpha
Helix 21	21	B	105	123	Right-handed alpha
Helix 22	22	B	153	171	Right-handed alpha
Helix 23	23	B	174	191	Right-handed alpha
Helix 24	24	B	193	198	Right-handed 310
Helix 25	25	B	226	236	Right-handed alpha
Helix 26	26	B	242	250	Right-handed alpha
Helix 27	27	B	251	255	Right-handed 310
Helix 28	28	B	278	287	Right-handed 310
Helix 29	29	B	301	320	Right-handed alpha
Helix 30	30	B	349	353	Right-handed 310
Helix 31	31	B	358	364	Right-handed alpha
Helix 32	32	B	369	383	Right-handed alpha
Helix 33	33	B	384	386	Right-handed 310
Helix 34	34	B	410	426	Right-handed alpha
Helix 35	35	B	426	434	Right-handed alpha
Helix 36	36	B	435	446	Right-handed alpha
Helix 37	37	C	38	56	Right-handed alpha
Helix 38	38	C	85	101	Right-handed alpha
Helix 39	39	C	105	123	Right-handed alpha
Helix 40	40	C	153	171	Right-handed alpha
Helix 41	41	C	174	191	Right-handed alpha
Helix 42	42	C	193	198	Right-handed 310
Helix 43	43	C	226	236	Right-handed alpha
Helix 44	44	C	242	250	Right-handed alpha
Helix 45	45	C	251	255	Right-handed 310
Helix 46	46	C	278	287	Right-handed 310
Helix 47	47	C	301	320	Right-handed alpha
Helix 48	48	C	349	353	Right-handed 310
Helix 49	49	C	358	364	Right-handed alpha
Helix 50	50	C	369	383	Right-handed alpha
Helix 51	51	C	384	386	Right-handed 310
Helix 52	52	C	410	426	Right-handed alpha
Helix 53	53	C	426	434	Right-handed alpha
Helix 54	54	C	435	446	Right-handed alpha
Helix 55	55	D	38	57	Right-handed alpha
Helix 56	56	D	85	101	Right-handed alpha
Helix 57	57	D	105	123	Right-handed alpha
Helix 58	58	D	153	171	Right-handed alpha
Helix 59	59	D	174	191	Right-handed alpha
Helix 60	60	D	192	198	Right-handed 310
Helix 61	61	D	226	236	Right-handed alpha
Helix 62	62	D	242	250	Right-handed alpha
Helix 63	63	D	251	255	Right-handed 310
Helix 64	64	D	278	287	Right-handed 310
Helix 65	65	D	301	320	Right-handed alpha
Helix 66	66	D	349	353	Right-handed 310
Helix 67	67	D	359	364	Right-handed alpha
Helix 68	68	D	369	383	Right-handed alpha
Helix 69	69	D	384	386	Right-handed 310
Helix 70	70	D	410	426	Right-handed alpha
Helix 71	71	D	426	434	Right-handed alpha
Helix 72	72	D	435	446	Right-handed alpha

There are 28 sheets in PDB entry 3EU8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	407	409	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	133	135	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	207	208	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	262	first strand
Strand 2	A	265	269	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	448	449	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	A	342	345	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	392	393	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	407	409	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	133	135	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	207	208	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	262	first strand
Strand 2	B	265	269	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	448	449	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	339	first strand
Strand 2	B	342	345	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	392	393	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	70	first strand
Strand 2	C	407	409	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	133	135	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	152	first strand
Strand 2	C	207	208	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	262	first strand
Strand 2	C	265	269	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	448	449	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	339	first strand
Strand 2	C	342	345	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	392	393	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	70	first strand
Strand 2	D	407	409	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	133	135	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	152	first strand
Strand 2	D	207	208	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	262	first strand
Strand 2	D	265	269	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	295	first strand
Strand 2	D	448	449	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	339	first strand
Strand 2	D	342	345	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	392	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3EU8

Analysis of interatomic Contacts of Structural Units in PDB entry:
3EU8