Analysis of interatomic Contacts of Structural Units in PDB entry:
3EVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EVJ entry

There are 2 chains in PDB entry 3EVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 ASP 6VAL 431
L
 VAL 5VAL 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3EVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
I
11 15Right-handed 310
Helix 2
2
I
45 70Right-handed alpha
Helix 3
3
I
79 91Right-handed alpha
Helix 4
4
I
95 106Right-handed alpha
Helix 5
5
I
112 118Right-handed alpha
Helix 6
6
I
118 132Right-handed alpha
Helix 7
7
I
155 166Right-handed alpha
Helix 8
8
I
180 195Right-handed alpha
Helix 9
9
I
230 234Right-handed 310
Helix 10
10
I
264 266Right-handed 310
Helix 11
11
I
291 297Right-handed alpha
Helix 12
12
I
300 311Right-handed alpha
Helix 13
13
I
331 337Right-handed alpha
Helix 14
14
I
341 345Right-handed 310
Helix 15
15
L
6 10Right-handed 310
Helix 16
16
L
45 68Right-handed alpha
Helix 17
17
L
79 92Right-handed alpha
Helix 18
18
L
96 106Right-handed alpha
Helix 19
19
L
112 117Right-handed alpha
Helix 20
20
L
118 132Right-handed alpha
Helix 21
21
L
155 166Right-handed alpha
Helix 22
22
L
178 194Right-handed alpha
Helix 23
23
L
230 234Right-handed 310
Helix 24
24
L
264 266Right-handed 310
Helix 25
25
L
292 297Right-handed alpha
Helix 26
26
L
300 311Right-handed alpha
Helix 27
27
L
331 339Right-handed alpha
Helix 28
28
L
341 345Right-handed 310
Helix 29
29
L
416 418Right-handed 310
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There are 9 sheets in PDB entry 3EVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
76 78first strand
Strand 2
I
419 426anti-parallel
Strand 3
I
408 414anti-parallel
Strand 4
I
279 285anti-parallel
Strand 5
I
268 273anti-parallel
Strand 6
I
251 262anti-parallel
Strand 7
I
312 321anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
171 172first strand
Strand 2
I
142 148parallel
Strand 3
I
213 220anti-parallel
Strand 4
I
364 376parallel
Strand 5
I
379 380anti-parallel
Strand 6
I
223 224anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
171 172first strand
Strand 2
I
142 148parallel
Strand 3
I
213 220anti-parallel
Strand 4
I
364 376parallel
Strand 5
I
323 330anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
238 240first strand
Strand 2
I
246 248anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
387 390first strand
Strand 2
L
312 321parallel
Strand 3
L
246 260anti-parallel
Strand 4
L
235 240anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
76 78first strand
Strand 2
L
419 426anti-parallel
Strand 3
L
408 414anti-parallel
Strand 4
L
279 284anti-parallel
Strand 5
L
270 273anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
168 173first strand
Strand 2
L
138 149parallel
Strand 3
L
213 224anti-parallel
Strand 4
L
379 389anti-parallel
Strand 5
L
366 375anti-parallel
Strand 6
L
324 330anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
153 154first strand
Strand 2
L
355 357anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
262 263first strand
Strand 2
L
267 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il