Analysis of interatomic Contacts of Structural Units in PDB entry:
3EYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EYP entry

There are 2 chains in PDB entry 3EYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 24PHE 482
B
 SER 24PHE 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3EYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 43Right-handed alpha
Helix 2
2
A
51 56Right-handed 310
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
77 88Right-handed alpha
Helix 5
5
A
114 118Right-handed 310
Helix 6
6
A
119 124Right-handed 310
Helix 7
7
A
126 139Right-handed alpha
Helix 8
8
A
150 155Right-handed alpha
Helix 9
9
A
160 178Right-handed alpha
Helix 10
10
A
196 211Right-handed alpha
Helix 11
11
A
219 226Right-handed 310
Helix 12
12
A
247 253Right-handed alpha
Helix 13
13
A
254 256Right-handed 310
Helix 14
14
A
257 263Right-handed alpha
Helix 15
15
A
287 294Right-handed 310
Helix 16
16
A
296 306Right-handed alpha
Helix 17
17
A
307 311Right-handed 310
Helix 18
18
A
327 346Right-handed alpha
Helix 19
19
A
362 372Right-handed 310
Helix 20
20
A
409 412Right-handed 310
Helix 21
21
A
433 436Right-handed 310
Helix 22
22
B
33 43Right-handed alpha
Helix 23
23
B
51 56Right-handed 310
Helix 24
24
B
67 71Right-handed 310
Helix 25
25
B
77 89Right-handed alpha
Helix 26
26
B
114 118Right-handed 310
Helix 27
27
B
119 124Right-handed 310
Helix 28
28
B
126 139Right-handed alpha
Helix 29
29
B
150 155Right-handed alpha
Helix 30
30
B
160 178Right-handed alpha
Helix 31
31
B
196 211Right-handed alpha
Helix 32
32
B
219 226Right-handed 310
Helix 33
33
B
247 253Right-handed alpha
Helix 34
34
B
254 256Right-handed 310
Helix 35
35
B
257 263Right-handed alpha
Helix 36
36
B
287 291Right-handed 310
Helix 37
37
B
296 306Right-handed alpha
Helix 38
38
B
307 311Right-handed 310
Helix 39
39
B
327 345Right-handed alpha
Helix 40
40
B
362 372Right-handed 310
Helix 41
41
B
409 412Right-handed 310
Helix 42
42
B
433 436Right-handed 310
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There are 8 sheets in PDB entry 3EYP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
184 186parallel
Strand 3
A
141 146parallel
Strand 4
A
92 98parallel
Strand 5
A
44 48parallel
Strand 6
A
313 317parallel
Strand 7
A
275 279parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
270 271anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
388 407anti-parallel
Strand 3
A
469 476anti-parallel
Strand 4
A
379 380anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
388 407anti-parallel
Strand 3
A
445 464anti-parallel
Strand 4
A
415 423anti-parallel
Strand 5
A
430 431anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 217first strand
Strand 2
B
184 186parallel
Strand 3
B
141 146parallel
Strand 4
B
92 98parallel
Strand 5
B
44 48parallel
Strand 6
B
313 317parallel
Strand 7
B
275 279parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
270 271anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
388 407anti-parallel
Strand 3
B
469 476anti-parallel
Strand 4
B
379 380anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
388 407anti-parallel
Strand 3
B
445 464anti-parallel
Strand 4
B
415 423anti-parallel
Strand 5
B
430 431anti-parallel
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