Analysis of interatomic Contacts of Structural Units in PDB entry:
3F0Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3F0Y entry

There are 9 chains in PDB entry 3F0Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 128	ASP 325
B	ASP 128	ASP 325
C	ASP 128	ASP 325
D	ASP 128	ASP 325
E	ASP 128	ASP 325
F	ASP 128	ASP 325
G	ILE 127	ASP 325
H	ASP 128	ASP 325
I	ASP 128	ASP 325

There are 45 helices in PDB entry 3F0Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	128	131	Right-handed 310
Helix 2	2	A	179	184	Right-handed alpha
Helix 3	3	A	185	188	Right-handed 310
Helix 4	4	A	231	236	Right-handed 310
Helix 5	5	A	246	252	Right-handed 310
Helix 6	6	B	128	131	Right-handed 310
Helix 7	7	B	179	184	Right-handed alpha
Helix 8	8	B	185	188	Right-handed 310
Helix 9	9	B	231	236	Right-handed 310
Helix 10	10	B	246	252	Right-handed 310
Helix 11	11	C	128	131	Right-handed 310
Helix 12	12	C	179	184	Right-handed alpha
Helix 13	13	C	185	188	Right-handed 310
Helix 14	14	C	231	236	Right-handed 310
Helix 15	15	C	249	252	Right-handed 310
Helix 16	16	D	128	131	Right-handed 310
Helix 17	17	D	179	184	Right-handed alpha
Helix 18	18	D	185	188	Right-handed 310
Helix 19	19	D	231	236	Right-handed 310
Helix 20	20	D	249	252	Right-handed 310
Helix 21	21	E	128	131	Right-handed 310
Helix 22	22	E	179	184	Right-handed alpha
Helix 23	23	E	185	188	Right-handed 310
Helix 24	24	E	232	236	Right-handed 310
Helix 25	25	E	246	252	Right-handed 310
Helix 26	26	F	128	131	Right-handed 310
Helix 27	27	F	179	184	Right-handed alpha
Helix 28	28	F	185	188	Right-handed 310
Helix 29	29	F	231	236	Right-handed 310
Helix 30	30	F	246	252	Right-handed 310
Helix 31	31	G	128	131	Right-handed 310
Helix 32	32	G	179	184	Right-handed alpha
Helix 33	33	G	185	188	Right-handed 310
Helix 34	34	G	231	236	Right-handed 310
Helix 35	35	G	246	252	Right-handed 310
Helix 36	36	H	128	131	Right-handed 310
Helix 37	37	H	179	184	Right-handed alpha
Helix 38	38	H	185	188	Right-handed 310
Helix 39	39	H	231	236	Right-handed 310
Helix 40	40	H	246	252	Right-handed 310
Helix 41	41	I	128	131	Right-handed 310
Helix 42	42	I	179	184	Right-handed alpha
Helix 43	43	I	185	188	Right-handed 310
Helix 44	44	I	231	236	Right-handed 310
Helix 45	45	I	249	252	Right-handed 310

There are 27 sheets in PDB entry 3F0Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	135	first strand
Strand 2	A	156	165	anti-parallel
Strand 3	A	168	177	anti-parallel
Strand 4	A	316	321	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	199	first strand
Strand 2	A	288	297	anti-parallel
Strand 3	A	268	277	anti-parallel
Strand 4	A	254	262	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	223	224	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	156	165	anti-parallel
Strand 3	B	168	177	anti-parallel
Strand 4	B	316	321	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	199	first strand
Strand 2	B	288	297	anti-parallel
Strand 3	B	268	277	anti-parallel
Strand 4	B	254	262	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	223	224	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	135	first strand
Strand 2	C	156	165	anti-parallel
Strand 3	C	168	177	anti-parallel
Strand 4	C	316	321	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	199	first strand
Strand 2	C	288	297	anti-parallel
Strand 3	C	268	277	anti-parallel
Strand 4	C	254	262	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	223	224	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	156	165	anti-parallel
Strand 3	D	168	177	anti-parallel
Strand 4	D	316	321	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	199	first strand
Strand 2	D	288	296	anti-parallel
Strand 3	D	268	277	anti-parallel
Strand 4	D	254	262	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	223	224	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	135	first strand
Strand 2	E	156	165	anti-parallel
Strand 3	E	168	177	anti-parallel
Strand 4	E	316	321	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	199	first strand
Strand 2	E	288	297	anti-parallel
Strand 3	E	268	277	anti-parallel
Strand 4	E	254	262	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	220	first strand
Strand 2	E	223	224	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	135	first strand
Strand 2	F	156	165	anti-parallel
Strand 3	F	168	177	anti-parallel
Strand 4	F	316	321	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	190	199	first strand
Strand 2	F	288	297	anti-parallel
Strand 3	F	268	277	anti-parallel
Strand 4	F	254	262	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	219	220	first strand
Strand 2	F	223	224	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	135	first strand
Strand 2	G	156	165	anti-parallel
Strand 3	G	168	177	anti-parallel
Strand 4	G	316	321	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	190	199	first strand
Strand 2	G	288	297	anti-parallel
Strand 3	G	268	277	anti-parallel
Strand 4	G	254	262	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	220	first strand
Strand 2	G	223	224	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	135	first strand
Strand 2	H	156	165	anti-parallel
Strand 3	H	168	177	anti-parallel
Strand 4	H	316	321	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	190	199	first strand
Strand 2	H	288	297	anti-parallel
Strand 3	H	268	277	anti-parallel
Strand 4	H	254	262	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	219	220	first strand
Strand 2	H	223	224	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	135	first strand
Strand 2	I	156	165	anti-parallel
Strand 3	I	168	177	anti-parallel
Strand 4	I	316	321	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	190	199	first strand
Strand 2	I	288	297	anti-parallel
Strand 3	I	268	277	anti-parallel
Strand 4	I	254	262	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	219	220	first strand
Strand 2	I	223	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3F0Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
3F0Y