Analysis of interatomic Contacts of Structural Units in PDB entry:
3F2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F2D entry

There are 3 chains in PDB entry 3F2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 G 5 C 17
T
 A 1 C 18
A
 VAL 233PHE 1444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 3F2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
235 239Right-handed 310
Helix 2
2
A
286 296Right-handed alpha
Helix 3
3
A
359 371Right-handed alpha
Helix 4
4
A
385 397Right-handed alpha
Helix 5
5
A
627 643Right-handed alpha
Helix 6
6
A
654 660Right-handed alpha
Helix 7
7
A
690 694Right-handed 310
Helix 8
8
A
701 706Right-handed 310
Helix 9
9
A
716 734Right-handed alpha
Helix 10
10
A
748 750Right-handed 310
Helix 11
11
A
751 762Right-handed alpha
Helix 12
12
A
780 788Right-handed alpha
Helix 13
13
A
789 791Right-handed 310
Helix 14
14
A
792 801Right-handed alpha
Helix 15
15
A
801 810Right-handed alpha
Helix 16
16
A
828 846Right-handed alpha
Helix 17
17
A
850 867Right-handed alpha
Helix 18
18
A
869 886Right-handed alpha
Helix 19
19
A
894 898Right-handed 310
Helix 20
20
A
899 905Right-handed alpha
Helix 21
21
A
935 939Right-handed 310
Helix 22
22
A
960 965Right-handed alpha
Helix 23
23
A
982 995Right-handed alpha
Helix 24
24
A
1009 1024Right-handed alpha
Helix 25
25
A
1029 1041Right-handed alpha
Helix 26
26
A
1062 1066Right-handed 310
Helix 27
27
A
1071 1075Right-handed 310
Helix 28
28
A
1086 1091Right-handed alpha
Helix 29
29
A
1103 1116Right-handed alpha
Helix 30
30
A
1118 1122Right-handed 310
Helix 31
31
A
1126 1132Right-handed alpha
Helix 32
32
A
1136 1140Right-handed 310
Helix 33
33
A
1142 1147Right-handed alpha
Helix 34
34
A
1160 1171Right-handed alpha
Helix 35
35
A
1174 1185Right-handed alpha
Helix 36
36
A
1194 1201Right-handed alpha
Helix 37
37
A
1205 1209Right-handed 310
Helix 38
38
A
1212 1223Right-handed alpha
Helix 39
39
A
1226 1239Right-handed alpha
Helix 40
40
A
1244 1254Right-handed alpha
Helix 41
41
A
1257 1267Right-handed alpha
Helix 42
42
A
1272 1293Right-handed alpha
Helix 43
43
A
1293 1305Right-handed alpha
Helix 44
44
A
1310 1317Right-handed alpha
Helix 45
45
A
1317 1330Right-handed alpha
Helix 46
46
A
1331 1335Right-handed 310
Helix 47
47
A
1336 1355Right-handed alpha
Helix 48
48
A
1382 1386Right-handed 310
Helix 49
49
A
1390 1404Right-handed alpha
Helix 50
50
A
1408 1417Right-handed alpha
Helix 51
51
A
1419 1429Right-handed alpha
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There are 8 sheets in PDB entry 3F2D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 259first strand
Strand 2
A
265 272anti-parallel
Strand 3
A
277 283anti-parallel
Strand 4
A
316 327parallel
Strand 5
A
301 311anti-parallel
Strand 6
A
243 259anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
400 409parallel
Strand 3
A
652 653parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
400 409parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
664 667anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 699first strand
Strand 2
A
738 740parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
891 893first strand
Strand 2
A
974 979anti-parallel
Strand 3
A
1096 1102parallel
Strand 4
A
1044 1056anti-parallel
Strand 5
A
999 1007anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
925 927first strand
Strand 2
A
916 918anti-parallel
Strand 3
A
952 954anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1070first strand
Strand 2
A
1082 1083anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1358 1359first strand
Strand 2
A
1378 1380parallel
Strand 3
A
1373 1375anti-parallel
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