Analysis of interatomic Contacts of Structural Units in PDB entry:
3F41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F41 entry

There are 2 chains in PDB entry 3F41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 47ALA 636
B
 PRO 47ALA 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3F41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
106 117Right-handed alpha
Helix 2
2
A
120 122Right-handed 310
Helix 3
3
A
146 150Right-handed 310
Helix 4
4
A
156 170Right-handed alpha
Helix 5
5
A
202 209Right-handed alpha
Helix 6
6
A
226 239Right-handed alpha
Helix 7
7
A
254 270Right-handed alpha
Helix 8
8
A
274 286Right-handed alpha
Helix 9
9
A
298 322Right-handed alpha
Helix 10
10
A
328 336Right-handed alpha
Helix 11
11
A
376 380Right-handed 310
Helix 12
12
A
405 420Right-handed alpha
Helix 13
13
A
448 450Right-handed 310
Helix 14
14
A
456 472Right-handed alpha
Helix 15
15
A
500 508Right-handed alpha
Helix 16
16
A
524 538Right-handed alpha
Helix 17
17
A
552 567Right-handed alpha
Helix 18
18
A
571 583Right-handed alpha
Helix 19
19
A
600 620Right-handed alpha
Helix 20
20
A
629 634Right-handed alpha
Helix 21
21
B
106 117Right-handed alpha
Helix 22
22
B
120 122Right-handed 310
Helix 23
23
B
146 150Right-handed 310
Helix 24
24
B
156 170Right-handed alpha
Helix 25
25
B
202 209Right-handed alpha
Helix 26
26
B
226 239Right-handed alpha
Helix 27
27
B
254 270Right-handed alpha
Helix 28
28
B
274 286Right-handed alpha
Helix 29
29
B
298 322Right-handed alpha
Helix 30
30
B
328 336Right-handed alpha
Helix 31
31
B
376 380Right-handed 310
Helix 32
32
B
405 420Right-handed alpha
Helix 33
33
B
448 450Right-handed 310
Helix 34
34
B
456 471Right-handed alpha
Helix 35
35
B
500 508Right-handed alpha
Helix 36
36
B
524 538Right-handed alpha
Helix 37
37
B
552 567Right-handed alpha
Helix 38
38
B
571 582Right-handed alpha
Helix 39
39
B
600 622Right-handed alpha
Helix 40
40
B
629 635Right-handed alpha
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There are 10 sheets in PDB entry 3F41. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
140 145anti-parallel
Strand 3
A
134 137anti-parallel
Strand 4
A
200 201anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
245 249parallel
Strand 4
A
124 130parallel
Strand 5
A
213 219parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 183first strand
Strand 2
A
188 196anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 494first strand
Strand 2
A
475 479anti-parallel
Strand 3
A
347 354parallel
Strand 4
A
440 446anti-parallel
Strand 5
A
434 437anti-parallel
Strand 6
A
498 499anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
398 401anti-parallel
Strand 3
A
543 547parallel
Strand 4
A
424 430parallel
Strand 5
A
511 517parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 62first strand
Strand 2
B
140 145anti-parallel
Strand 3
B
134 137anti-parallel
Strand 4
B
200 201anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
99 102anti-parallel
Strand 3
B
245 249parallel
Strand 4
B
124 130parallel
Strand 5
B
213 219parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 183first strand
Strand 2
B
188 196anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
492 494first strand
Strand 2
B
475 479anti-parallel
Strand 3
B
347 354parallel
Strand 4
B
440 446anti-parallel
Strand 5
B
434 437anti-parallel
Strand 6
B
498 499anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 366first strand
Strand 2
B
398 401anti-parallel
Strand 3
B
543 547parallel
Strand 4
B
424 430parallel
Strand 5
B
511 517parallel
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