Analysis of interatomic Contacts of Structural Units in PDB entry:
3F47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F47 entry

There is 1 chain in PDB entry 3F47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3F47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 18Right-handed alpha
Helix 2
2
A
22 33Right-handed alpha
Helix 3
3
A
34 40Right-handed 310
Helix 4
4
A
41 54Right-handed alpha
Helix 5
5
A
65 69Right-handed 310
Helix 6
6
A
80 90Right-handed alpha
Helix 7
7
A
92 95Right-handed 310
Helix 8
8
A
96 109Right-handed alpha
Helix 9
9
A
123 128Right-handed 310
Helix 10
10
A
134 140Right-handed alpha
Helix 11
11
A
154 161Right-handed alpha
Helix 12
12
A
162 166Right-handed 310
Helix 13
13
A
179 190Right-handed alpha
Helix 14
14
A
220 236Right-handed alpha
Helix 15
15
A
245 251Right-handed alpha
Helix 16
16
A
253 274Right-handed alpha
Helix 17
17
A
278 301Right-handed alpha
Helix 18
18
A
302 308Right-handed 310
Helix 19
19
A
310 322Right-handed 310
Helix 20
20
A
323 327Right-handed 310
Helix 21
21
A
328 340Right-handed alpha
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There are 3 sheets in PDB entry 3F47. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
59 63parallel
Strand 3
A
2 6parallel
Strand 4
A
144 147parallel
Strand 5
A
171 174parallel
Strand 6
A
196 199parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
117 120parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
238 242parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il