Analysis of interatomic Contacts of Structural Units in PDB entry:
3F4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F4B entry

There are 4 chains in PDB entry 3F4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 80ASP 389
B
 ASN 80ASP 389
C
 ASN 80ASP 389
D
 ASN 80ASP 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 3F4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 105Right-handed alpha
Helix 2
2
A
114 127Right-handed alpha
Helix 3
3
A
130 135Right-handed alpha
Helix 4
4
A
158 162Right-handed 310
Helix 5
5
A
163 168Right-handed alpha
Helix 6
6
A
179 192Right-handed alpha
Helix 7
7
A
210 214Right-handed 310
Helix 8
8
A
215 227Right-handed alpha
Helix 9
9
A
227 238Right-handed alpha
Helix 10
10
A
252 256Right-handed 310
Helix 11
11
A
265 289Right-handed alpha
Helix 12
12
A
302 307Right-handed alpha
Helix 13
13
A
331 344Right-handed alpha
Helix 14
14
A
351 363Right-handed alpha
Helix 15
15
A
364 368Right-handed 310
Helix 16
16
A
380 384Right-handed 310
Helix 17
17
B
93 104Right-handed alpha
Helix 18
18
B
114 116Right-handed 310
Helix 19
19
B
117 126Right-handed alpha
Helix 20
20
B
163 168Right-handed alpha
Helix 21
21
B
179 192Right-handed alpha
Helix 22
22
B
210 214Right-handed 310
Helix 23
23
B
215 227Right-handed alpha
Helix 24
24
B
227 238Right-handed alpha
Helix 25
25
B
252 256Right-handed 310
Helix 26
26
B
265 288Right-handed alpha
Helix 27
27
B
302 307Right-handed alpha
Helix 28
28
B
331 344Right-handed alpha
Helix 29
29
B
351 363Right-handed alpha
Helix 30
30
B
364 368Right-handed 310
Helix 31
31
B
380 384Right-handed 310
Helix 32
32
C
93 104Right-handed alpha
Helix 33
33
C
114 116Right-handed 310
Helix 34
34
C
117 127Right-handed alpha
Helix 35
35
C
130 135Right-handed alpha
Helix 36
36
C
158 162Right-handed 310
Helix 37
37
C
163 168Right-handed alpha
Helix 38
38
C
179 192Right-handed alpha
Helix 39
39
C
215 227Right-handed alpha
Helix 40
40
C
227 238Right-handed alpha
Helix 41
41
C
252 256Right-handed 310
Helix 42
42
C
265 289Right-handed alpha
Helix 43
43
C
302 307Right-handed alpha
Helix 44
44
C
331 344Right-handed alpha
Helix 45
45
C
351 363Right-handed alpha
Helix 46
46
C
364 368Right-handed 310
Helix 47
47
C
380 384Right-handed 310
Helix 48
48
D
93 105Right-handed alpha
Helix 49
49
D
114 116Right-handed 310
Helix 50
50
D
117 128Right-handed alpha
Helix 51
51
D
130 134Right-handed 310
Helix 52
52
D
158 162Right-handed 310
Helix 53
53
D
163 169Right-handed alpha
Helix 54
54
D
169 174Right-handed alpha
Helix 55
55
D
179 191Right-handed alpha
Helix 56
56
D
210 214Right-handed 310
Helix 57
57
D
215 227Right-handed alpha
Helix 58
58
D
227 238Right-handed alpha
Helix 59
59
D
252 256Right-handed 310
Helix 60
60
D
265 289Right-handed alpha
Helix 61
61
D
302 307Right-handed alpha
Helix 62
62
D
331 344Right-handed alpha
Helix 63
63
D
351 363Right-handed alpha
Helix 64
64
D
364 368Right-handed 310
Helix 65
65
D
380 384Right-handed 310
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There are 5 sheets in PDB entry 3F4B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 151first strand
Strand 2
A
108 113parallel
Strand 3
A
82 86parallel
Strand 4
A
194 199parallel
Strand 5
A
241 251parallel
Strand 6
A
291 297parallel
Strand 7
A
374 377parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
108 113parallel
Strand 3
B
82 85parallel
Strand 4
B
194 199parallel
Strand 5
B
241 251parallel
Strand 6
B
291 297parallel
Strand 7
B
374 377parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
142 143anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
108 113parallel
Strand 3
C
82 86parallel
Strand 4
C
194 199parallel
Strand 5
C
241 251parallel
Strand 6
C
291 297parallel
Strand 7
C
374 377parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 151first strand
Strand 2
D
108 113parallel
Strand 3
D
82 86parallel
Strand 4
D
194 199parallel
Strand 5
D
241 251parallel
Strand 6
D
291 297parallel
Strand 7
D
374 377parallel
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