Analysis of interatomic Contacts of Structural Units in PDB entry:
3F4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F4C entry

There are 4 chains in PDB entry 3F4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 101ILE 242
A
 LEU 244ALA 424
B
 LYS 101ILE 242
B
 LEU 244ALA 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3F4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 115Right-handed 310
Helix 2
2
A
130 135Right-handed 310
Helix 3
3
A
141 158Right-handed alpha
Helix 4
4
A
169 173Right-handed 310
Helix 5
5
A
175 187Right-handed alpha
Helix 6
6
A
204 213Right-handed alpha
Helix 7
7
A
215 230Right-handed alpha
Helix 8
8
A
252 270Right-handed alpha
Helix 9
9
A
282 293Right-handed alpha
Helix 10
10
A
296 298Right-handed 310
Helix 11
11
A
304 308Right-handed 310
Helix 12
12
A
310 319Right-handed alpha
Helix 13
13
A
339 353Right-handed alpha
Helix 14
14
A
355 357Right-handed 310
Helix 15
15
A
377 384Right-handed alpha
Helix 16
16
A
390 395Right-handed alpha
Helix 17
17
A
395 402Right-handed alpha
Helix 18
18
A
406 415Right-handed alpha
Helix 19
19
A
415 423Right-handed alpha
Helix 20
20
B
113 115Right-handed 310
Helix 21
21
B
130 135Right-handed 310
Helix 22
22
B
141 158Right-handed alpha
Helix 23
23
B
175 187Right-handed alpha
Helix 24
24
B
198 202Right-handed 310
Helix 25
25
B
204 213Right-handed alpha
Helix 26
26
B
215 230Right-handed alpha
Helix 27
27
B
252 270Right-handed alpha
Helix 28
28
B
282 293Right-handed alpha
Helix 29
29
B
296 298Right-handed 310
Helix 30
30
B
304 308Right-handed 310
Helix 31
31
B
310 319Right-handed alpha
Helix 32
32
B
339 353Right-handed alpha
Helix 33
33
B
355 357Right-handed 310
Helix 34
34
B
377 384Right-handed alpha
Helix 35
35
B
390 395Right-handed alpha
Helix 36
36
B
395 402Right-handed alpha
Helix 37
37
B
406 415Right-handed alpha
Helix 38
38
B
415 422Right-handed alpha
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There are 6 sheets in PDB entry 3F4C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
108 111anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
163 166parallel
Strand 3
A
189 194parallel
Strand 4
A
241 245parallel
Strand 5
A
272 276parallel
Strand 6
A
300 302parallel
Strand 7
A
323 326parallel
Strand 8
A
359 361parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
366 369parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
108 111anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
163 166parallel
Strand 3
B
189 194parallel
Strand 4
B
241 245parallel
Strand 5
B
272 276parallel
Strand 6
B
300 302parallel
Strand 7
B
323 326parallel
Strand 8
B
359 361parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 126first strand
Strand 2
B
366 369parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il