Analysis of interatomic Contacts of Structural Units in PDB entry:
3F59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3F59 entry

There are 4 chains in PDB entry 3F59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 912	ARG 1068
B	PHE 913	ARG 1068
C	ALA 910	ARG 1068
D	ASN 909	ARG 1068

There are 15 helices in PDB entry 3F59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	955	959	Right-handed 310
Helix 2	2	A	1025	1027	Right-handed 310
Helix 3	3	A	1028	1034	Right-handed alpha
Helix 4	4	A	1042	1050	Right-handed alpha
Helix 5	5	B	955	959	Right-handed 310
Helix 6	6	B	1025	1027	Right-handed 310
Helix 7	7	B	1028	1034	Right-handed alpha
Helix 8	8	B	1042	1049	Right-handed alpha
Helix 9	9	C	1025	1027	Right-handed 310
Helix 10	10	C	1028	1034	Right-handed alpha
Helix 11	11	C	1042	1049	Right-handed alpha
Helix 12	12	D	955	959	Right-handed 310
Helix 13	13	D	1025	1027	Right-handed 310
Helix 14	14	D	1028	1034	Right-handed alpha
Helix 15	15	D	1042	1049	Right-handed alpha

There are 12 sheets in PDB entry 3F59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	919	first strand
Strand 2	A	947	954	anti-parallel
Strand 3	A	975	979	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	935	938	anti-parallel
Strand 3	A	984	994	anti-parallel
Strand 4	A	1051	1058	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	970	971	first strand
Strand 2	A	1062	1067	anti-parallel
Strand 3	A	1006	1011	anti-parallel
Strand 4	A	1018	1019	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	919	first strand
Strand 2	B	947	954	anti-parallel
Strand 3	B	975	979	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	924	927	first strand
Strand 2	B	935	938	anti-parallel
Strand 3	B	984	994	anti-parallel
Strand 4	B	1051	1058	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	970	971	first strand
Strand 2	B	1062	1068	anti-parallel
Strand 3	B	1005	1011	anti-parallel
Strand 4	B	1018	1019	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	915	919	first strand
Strand 2	C	947	954	anti-parallel
Strand 3	C	975	979	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	924	927	first strand
Strand 2	C	935	938	anti-parallel
Strand 3	C	984	994	anti-parallel
Strand 4	C	1051	1058	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	970	971	first strand
Strand 2	C	1062	1067	anti-parallel
Strand 3	C	1006	1011	anti-parallel
Strand 4	C	1018	1019	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	915	919	first strand
Strand 2	D	947	954	anti-parallel
Strand 3	D	975	979	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	924	927	first strand
Strand 2	D	935	938	anti-parallel
Strand 3	D	984	994	anti-parallel
Strand 4	D	1051	1058	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	970	971	first strand
Strand 2	D	1062	1068	anti-parallel
Strand 3	D	1005	1011	anti-parallel
Strand 4	D	1018	1019	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3F59

Analysis of interatomic Contacts of Structural Units in PDB entry:
3F59