Analysis of interatomic Contacts of Structural Units in PDB entry:
3F5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F5D entry

There is 1 chain in PDB entry 3F5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ASN 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3F5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 28Right-handed alpha
Helix 2
2
A
79 92Right-handed alpha
Helix 3
3
A
100 109Right-handed alpha
Helix 4
4
A
121 126Right-handed 310
Helix 5
5
A
155 167Right-handed alpha
Helix 6
6
A
171 185Right-handed alpha
Helix 7
7
A
185 194Right-handed alpha
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There are 2 sheets in PDB entry 3F5D. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
32 38parallel
Strand 3
A
4 9parallel
Strand 4
A
66 69parallel
Strand 5
A
96 99parallel
Strand 6
A
148 151parallel
Strand 7
A
142 145anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
50 52anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il