Analysis of interatomic Contacts of Structural Units in PDB entry:
3F5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F5F entry

There is 1 chain in PDB entry 3F5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LYS 1354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3F5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 32Right-handed alpha
Helix 2
2
A
42 53Right-handed alpha
Helix 3
3
A
64 73Right-handed alpha
Helix 4
4
A
82 87Right-handed alpha
Helix 5
5
A
90 97Right-handed alpha
Helix 6
6
A
128 130Right-handed 310
Helix 7
7
A
131 141Right-handed alpha
Helix 8
8
A
153 164Right-handed alpha
Helix 9
9
A
185 201Right-handed alpha
Helix 10
10
A
209 219Right-handed alpha
Helix 11
11
A
228 230Right-handed 310
Helix 12
12
A
231 238Right-handed alpha
Helix 13
13
A
272 283Right-handed alpha
Helix 14
14
A
286 297Right-handed alpha
Helix 15
15
A
304 312Right-handed alpha
Helix 16
16
A
314 327Right-handed alpha
Helix 17
17
A
335 352Right-handed alpha
Helix 18
18
A
356 368Right-handed alpha
Helix 19
19
A
1085 1101Right-handed alpha
Helix 20
20
A
1109 1113Right-handed 310
Helix 21
21
A
1117 1131Right-handed alpha
Helix 22
22
A
1132 1135Right-handed 310
Helix 23
23
A
1147 1152Right-handed 310
Helix 24
24
A
1165 1180Right-handed alpha
Helix 25
25
A
1197 1204Right-handed alpha
Helix 26
26
A
1210 1214Right-handed 310
Helix 27
27
A
1216 1223Right-handed alpha
Helix 28
28
A
1225 1230Right-handed 310
Helix 29
29
A
1233 1247Right-handed alpha
Helix 30
30
A
1256 1268Right-handed alpha
Helix 31
31
A
1268 1273Right-handed alpha
Helix 32
32
A
1274 1281Right-handed alpha
Helix 33
33
A
1297 1305Right-handed alpha
Helix 34
34
A
1307 1330Right-handed alpha
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There are 8 sheets in PDB entry 3F5F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
7 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
106 111anti-parallel
Strand 6
A
301 302anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
7 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
328 329parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
102 103anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
222 227parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
242 245anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
181 182anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
1348 1351anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1107first strand
Strand 2
A
1137 1141parallel
Strand 3
A
1075 1078parallel
Strand 4
A
1158 1163parallel
Strand 5
A
1248 1253parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1332 1335first strand
Strand 2
A
1338 1341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il